Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra5g2610 | ATGGAAGGAGGGACAAGGCAGGACTCAGTTCCTCTTCATGGTTCCATTGATAAGTCTAGGATTCTGGATGTTAAACCTCTGAAGAGTTTGATTCCTATTTTCTCTATGTCTTCTCAAGCTCCACCTCCTGGCCAGTATCCTACTGGGTTTTCACCATTTTCCCCCTTTGGTGCACCTCAGCAAACTCCAACTGAGGTGACACCAAATGGTGCTTCCATACCTACTCCAATAAGGGTATATAGCATTCCACCAGGGGCAGGAGACTCCAGTTCAACAATGGAGGGGTTCAGTGGTCAACGTACTTCTGGGAAGAAAAAACGTGGATCACCAAAGTCGAGCAGCGCCAAATCATCCTTAGATAAGCCTAAGAAAACTCAAGAGCCCCCTGTTGATTTAGGTGTTTTAGTTGGTATTACCCCTGCTCAAAAAGAAGATGGTAGCCGTGAAGTGGTTAATTTTGTGCTCATGGCGTTTGATGCTCTTAGAAGAAGGCTCTGCCAACTTGAAGGGGCCAAAGAATTGAGCTTGGGTCCGATCAAGCGTGCAGATTTGAAAGCCTGCAATACTTTGATGACCAAAGGAATCCGGACAAACACGAGGAAGAGAATAGGATCAGTTCCTGGGGTTGAGATTGGTGACATTTTCTTTTTCAGAGCCGAAATGTGTGTTGTGGGTTTGCATGCTCACTTCATGGGTGGAATTGATGCCTTGCATATTAGGGGTGAGTTTGAGGAGGAAACTTTGGCTGTGAGCATTGTTTCATCAGGAGAATATGATGATGATGCTGAGGATATTGATGTTATAACGTATACTGGTCAGGGAGGGAACTTCTTCAAGAAAGATAAGCACGCCATTGACCAGAAGCTTAAAAGGGGTAATCTTGCTATGGATAGGAGTTCGCGACAACTCAATGAAATAAGAGTCATCCGGGGGATTAGGGATGATGTGAATCCAAATTTAAAAGTCTATGTCTATGATGGTTTGTATAAAATTCAGGATTCATGGATTGGAAAAGCAAAAGGTGGTGGTGATGTATTTAAGTATAAGTTGGTTAGAATGCCTGGACAACCTAGTGCCTATTCTGTTTGGAAATCAGTTCAGAAGTGGAAATCTGGCACTTCAAGGATTGGACTTATTCTTGCAGACATTTCCAATGGAGCTGAGAATATTCCTGTATCACTTGTCAATGAAGTTGATAATGTGAAGGCGCCTACTTATTTCAATTATTTCCATTCTCTTAGACACCCTAAATCATTCAGTTTGATGCAGCCTTCAAATGGGTGCACCTGTACTAAATCATGTGTCCCTGGTGATTCGAACTGCTCTTGCATTAGGAGAAATGAAGGTGATTTCCCTTATATTGGAAATGGTGTTCTGGTGAGCCGGATGCAATTGGTTCATGAATGTGGCCCTACATGTCAGTGTTTTCCTAACTGCAAAAATAGAGTATCCCAAACCGGTTTAAAGCACCCCATGGAAGTGTTCAAAACGAAGGATAGAGGGTGGGGTCTTCGGTCTCTGGATCCTATTCGCTCTGGTACCTTCATTTGTGAATATGCAGGAGAAGTTGTTGATAGGGCCAAAGTAAGTCAGCTTGTGAGGGAAGGAAATGAGTATGTTTTTGATACAACCCAGATTTATGGTCAATTCAAGTGGAATTATGAGCCTAGGCTTTTGGAAGAAGTCAATCCCAATGAATCTAGTGAGCATTATGCCATGCCGTATCCTTTGACCATAAGTGCCAAGAATTTTGGGAATGTGGCTAGATTCATGAATCATAGTTGCTCCCCAAATGTTTTTTGGCAGCCTGTGGTATATGAAGAAAACAACCAATCGTACGTCCATGTTGCCTTCTTTGCTCTCAGACACATTCCACCAATGACAGAGTTAACGTATGACTATGGAGTTGCTCGATCTGATCATGCTGAGGGTATCCGTGCAGTCAAAGGGAGAAAGAAATGCTTATGCAGATCATCGAAATGCCGAGGTTCTTATGGTTAA | 2001 | 0.4293 | MEGGTRQDSVPLHGSIDKSRILDVKPLKSLIPIFSMSSQAPPPGQYPTGFSPFSPFGAPQQTPTEVTPNGASIPTPIRVYSIPPGAGDSSSTMEGFSGQRTSGKKKRGSPKSSSAKSSLDKPKKTQEPPVDLGVLVGITPAQKEDGSREVVNFVLMAFDALRRRLCQLEGAKELSLGPIKRADLKACNTLMTKGIRTNTRKRIGSVPGVEIGDIFFFRAEMCVVGLHAHFMGGIDALHIRGEFEEETLAVSIVSSGEYDDDAEDIDVITYTGQGGNFFKKDKHAIDQKLKRGNLAMDRSSRQLNEIRVIRGIRDDVNPNLKVYVYDGLYKIQDSWIGKAKGGGDVFKYKLVRMPGQPSAYSVWKSVQKWKSGTSRIGLILADISNGAENIPVSLVNEVDNVKAPTYFNYFHSLRHPKSFSLMQPSNGCTCTKSCVPGDSNCSCIRRNEGDFPYIGNGVLVSRMQLVHECGPTCQCFPNCKNRVSQTGLKHPMEVFKTKDRGWGLRSLDPIRSGTFICEYAGEVVDRAKVSQLVREGNEYVFDTTQIYGQFKWNYEPRLLEEVNPNESSEHYAMPYPLTISAKNFGNVARFMNHSCSPNVFWQPVVYEENNQSYVHVAFFALRHIPPMTELTYDYGVARSDHAEGIRAVKGRKKCLCRSSKCRGSYG* | 667 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra5g2610 | 666 | SMART | G9a_1 | 199 | 356 | IPR003105 | - | |
Vra5g2610 | 666 | MobiDBLite | consensus disorder prediction | 54 | 71 | - | - | |
Vra5g2610 | 666 | Gene3D | SET domain | 374 | 665 | IPR046341 | - | |
Vra5g2610 | 666 | SUPERFAMILY | SET domain | 389 | 663 | IPR046341 | - | |
Vra5g2610 | 666 | Pfam | SAD/SRA domain | 203 | 356 | IPR003105 | - | |
Vra5g2610 | 666 | SMART | preset_2 | 380 | 474 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
Vra5g2610 | 666 | ProSiteProfiles | Pre-SET domain profile. | 426 | 487 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
Vra5g2610 | 666 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-9 SPECIFIC SUVH1 | 14 | 664 | - | - | |
Vra5g2610 | 666 | ProSiteProfiles | Post-SET domain profile. | 650 | 666 | IPR003616 | - | |
Vra5g2610 | 666 | Pfam | SET domain | 501 | 635 | IPR001214 | GO:0005515 | |
Vra5g2610 | 666 | MobiDBLite | consensus disorder prediction | 35 | 132 | - | - | |
Vra5g2610 | 666 | Pfam | Pre-SET motif | 383 | 482 | IPR007728 | GO:0005634|GO:0008270|GO:0018024|GO:0034968 | |
Vra5g2610 | 666 | ProSiteProfiles | SET domain profile. | 490 | 635 | IPR001214 | GO:0005515 | |
Vra5g2610 | 666 | MobiDBLite | consensus disorder prediction | 85 | 103 | - | - | |
Vra5g2610 | 666 | SMART | set_7 | 490 | 641 | IPR001214 | GO:0005515 | |
Vra5g2610 | 666 | PANTHER | HISTONE-LYSINE N-METHYLTRANSFERASE SETMAR | 14 | 664 | - | - | |
Vra5g2610 | 666 | SUPERFAMILY | PUA domain-like | 186 | 374 | IPR015947 | - | |
Vra5g2610 | 666 | ProSiteProfiles | YDG domain profile. | 204 | 352 | IPR003105 | - | |
Vra5g2610 | 666 | ProSiteProfiles | Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. | 62 | 666 | IPR025794 | GO:0016571 | |
Vra5g2610 | 666 | Gene3D | - | 186 | 373 | IPR036987 | - |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra5g2610 | Vra-Chr5 | 32900150 | 32905558 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra5g2610 | 1 | 666 | Su(var)3-9 homologs | AT1G73100 | 50.218 | 0.0 | 674 |
Select | Regulatory Factors | Family | Gene | Hmm_acc | Hmm_name | E_value | Clan |
---|---|---|---|---|---|---|---|
TR | SET | Vra5g2610 | SAD_SRA | 1.4e-45 | CL0178 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra5g2610 | K24405 | - | gmx:100812173 | 1120.92 |