Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2609 ATGTCCAAAAACAAAGGGAAGAAGAAGAAAAAGAGCGAAAGCGACGAAGACGACGACGTTTTCTACTACCGCTATAGCAGCGTAAACCCTAACCCTACCCAACACAATCCCAATTCAAATCCAAATCCCAATTCAAATCCCAAAACCAATAACAAAGGATCCTCGTCGTTGGCACCGTCCAAATCAACGTTGTACGTTTCAAACCTCGATTACTCGCTAACCAATTCCGACCTCCACACGCTCTTCTCCAAATTCGGCCGAATCGCGCGCGTCACAGTCCTCAAGGACCGCCACACGCGCCTAAGCCGTGGCGTCGCATTCATCCAGTTCGTCTCCCCCGACGACGCGCGCAACGCTGCCGAGCAGACGCACCGGATGATCCTCAAAGACCGCACTCTCACCGCCTCCATCGCCACCGACAACGGCCGCGCGCCCGAGTTCATCCGCAAGCGCGTCTACCGCGACACTGCCCGCTGCTTCGAGTGCGGCGCCGACGGGCACCTCTCCTACGATTGCCCGCGGAACCATTTAGGCCCCCGCCAGCGCCCCGAGCCCAAACGCCCCCGACGTGTGCCCCACCACCGCGATGACGACAACGACGACGGCGGGGAGGATTCTGACGGTGTCGGAGCCGGTGCTCGGTTCGAAGATGATAATTGGGCGTCCGTCGTGGACGACGGCGCCGATGAGAGGCTGTTGACGGGAAAGCGCGACGACGATGCTGTGGCTGCGAAGAGTAAGAAGAAGAAGAAAGCTGGGTACTTCAGTGATGAGAGTGATGATGATGACTTTGATGGTTGA 801 0.5768 MSKNKGKKKKKSESDEDDDVFYYRYSSVNPNPTQHNPNSNPNPNSNPKTNNKGSSSLAPSKSTLYVSNLDYSLTNSDLHTLFSKFGRIARVTVLKDRHTRLSRGVAFIQFVSPDDARNAAEQTHRMILKDRTLTASIATDNGRAPEFIRKRVYRDTARCFECGADGHLSYDCPRNHLGPRQRPEPKRPRRVPHHRDDDNDDGGEDSDGVGAGARFEDDNWASVVDDGADERLLTGKRDDDAVAAKSKKKKKAGYFSDESDDDDFDG* 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2609 266 SUPERFAMILY Retrovirus zinc finger-like domains 140 175 IPR036875 GO:0003676|GO:0008270
Vra5g2609 266 Gene3D - 149 192 - -
Vra5g2609 266 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 263 IPR044598 GO:0000398|GO:0005689
Vra5g2609 266 ProSiteProfiles Zinc finger CCHC-type profile. 158 174 IPR001878 GO:0003676|GO:0008270
Vra5g2609 266 MobiDBLite consensus disorder prediction 8 22 - -
Vra5g2609 266 SUPERFAMILY RNA-binding domain, RBD 35 147 IPR035979 GO:0003676
Vra5g2609 266 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 133 IPR000504 GO:0003723
Vra5g2609 266 SMART c2hcfinal6 158 174 IPR001878 GO:0003676|GO:0008270
Vra5g2609 266 MobiDBLite consensus disorder prediction 171 266 - -
Vra5g2609 266 MobiDBLite consensus disorder prediction 219 257 - -
Vra5g2609 266 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 140 IPR000504 GO:0003723
Vra5g2609 266 MobiDBLite consensus disorder prediction 26 59 - -
Vra5g2609 266 MobiDBLite consensus disorder prediction 177 200 - -
Vra5g2609 266 MobiDBLite consensus disorder prediction 1 59 - -
Vra5g2609 266 PANTHER ZINC FINGER CCHC-TYPE AND RNA-BINDING MOTIF-CONTAINING PROTEIN 1 13 263 - -
Vra5g2609 266 SMART rrm1_1 63 136 IPR000504 GO:0003723
Vra5g2609 266 Gene3D - 1 146 IPR012677 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2609 Vra-Chr5 32898211 32899327 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2609 62 151 Eukaryotic Initiation Factors Gene Family AT3G16380 32.222 9.36e-10 57.0
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2609 K13154 - gmx:100814914 279.256