Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2607 ATGGGTCAAATGACACATGAGATTGATGACAATGTGCATGGTGAGAATCAGACAGGGTCACGGTTGAATGGCGGTGGTATTGGAGGAGGTACTGTTCTGAAGAAAGGGCCATGGACAGCTGCTGAAGATGTTATTTTGGTGGACTATGTCAATACGCATGGAGAGGGGAATTGGAATGCTGTTCAGAAGTATTCAGGCCTTTCTCGTTGTGGAAAAAGCTGCAGATTGCGATGGGCCAATCACCTACGGCCAAACTTAAAGAAAGGCGCATTTACTGCAGAAGAGGAGCAGACGATCGCTGAACTCCATGCCAAAATGGGAAACAAATGGGCACGCATGGCGGCACATTTGCCTGGTCGTACAGATAACGAAATAAAAAACTACTGGAACACCCGGATGAAGAGGCGTCAACGGGCTGGCTTGCCACTTTATCCTCCGGAAGTAGTACTGCAAGGATTTCAAGATAATAAGCATGACCAAGGTACTGCTGAAATCAGCGATGGAGATGGAGGCCACCAGGATTTCATGGAGAAAAGCAATTACGAGATGCATGATGCAATATATGACAGTCTGAAGGAAAATCAGGGAATCTTACCTTTTGTGCCTCAGCTTCCTGATATTTCTGCTAATAGCATTCTGCCAAATGTTCTTGGTTCTCCTTCATACTGTAATTTCCTGCCATCGACATTACCTAACCATGATCATCTTCAAGAGTCATCCGTCTCATTTGTTGGTTCCAATGAATTGAACAGTAATGGGTTTTATCCATTTGACAACTTTAAGGATAATACTTCTGATAGGATTGCAGAATCATTTGGATTGCATTCTCCCCTTGATCATGGTGCCTCCTCATATGGCTCAATCTGTTACAGCCATTCAGTATCGAATGACAATTACTCTACTTCTAAGCTGGCTTCTGAGGCTGTGAAGTCAGAGCTCCCTTCACTCCAATATCCAGAAACTGAATTTGGTAGCTGGGGTACCTCTACCCCGCCTCCATTGAATGATTCTACTGATGTTTTCATCCATTCTCCTCAACCACCTTATGCACTAGACTCAGGTTCTTCTTCATCACTCAGTCGCTTCCTTAATGAATTTCTTTATCAGCAGGCGAAGACTCTTGGTTATTCAAATAATAATTGGCCTGAGAGTTCAAATTCATCCATTGCAACTCCCGTTGATGGAGCTGAGAGTTCAGCTTTGAATATGTACGAGACAGAGTGGGAGGATTATGCTGACCCTGTATCTCCCTTTGGTGCAACTTCAATCCTGAATGAGCATCCTGTTGTTGGCACCAACGGAAAGCCATGGGATGGGTGGGAACCTTTTCAGACCTTTAGTGGCAACAATGTGAAATTGCAGTCAGTTGATCAGGTTTCGGCCCCTAAGATTGAAAATCAATCCATGTCTATGTTGAATCTCACTTGGCCAGATGTCTTGTTAGCCTCAGATTGGCACGAACTGTATTCTGAGAACAATAGCATGAACCAAGCTGACATGATTGATGCTAGTGATAATTTCACAAGACAGTAA 1533 0.439 MGQMTHEIDDNVHGENQTGSRLNGGGIGGGTVLKKGPWTAAEDVILVDYVNTHGEGNWNAVQKYSGLSRCGKSCRLRWANHLRPNLKKGAFTAEEEQTIAELHAKMGNKWARMAAHLPGRTDNEIKNYWNTRMKRRQRAGLPLYPPEVVLQGFQDNKHDQGTAEISDGDGGHQDFMEKSNYEMHDAIYDSLKENQGILPFVPQLPDISANSILPNVLGSPSYCNFLPSTLPNHDHLQESSVSFVGSNELNSNGFYPFDNFKDNTSDRIAESFGLHSPLDHGASSYGSICYSHSVSNDNYSTSKLASEAVKSELPSLQYPETEFGSWGTSTPPPLNDSTDVFIHSPQPPYALDSGSSSSLSRFLNEFLYQQAKTLGYSNNNWPESSNSSIATPVDGAESSALNMYETEWEDYADPVSPFGATSILNEHPVVGTNGKPWDGWEPFQTFSGNNVKLQSVDQVSAPKIENQSMSMLNLTWPDVLLASDWHELYSENNSMNQADMIDASDNFTRQ* 511
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2607 510 Gene3D - 90 136 - -
Vra5g2607 510 ProSiteProfiles Myb-like domain profile. 30 82 IPR001005 -
Vra5g2607 510 SMART sant 34 84 IPR001005 -
Vra5g2607 510 SMART sant 87 135 IPR001005 -
Vra5g2607 510 Gene3D - 34 87 - -
Vra5g2607 510 Pfam Myb-like DNA-binding domain 88 131 IPR001005 -
Vra5g2607 510 Pfam Myb-like DNA-binding domain 35 82 IPR001005 -
Vra5g2607 510 PANTHER TRANSCRIPTION FACTOR, PUTATIVE-RELATED 1 492 - -
Vra5g2607 510 MobiDBLite consensus disorder prediction 1 28 - -
Vra5g2607 510 ProSiteProfiles Myb-like domain profile. 83 133 IPR001005 -
Vra5g2607 510 PANTHER TRANSCRIPTION FACTOR MYB33-RELATED 1 492 - -
Vra5g2607 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 83 137 IPR017930 -
Vra5g2607 510 SUPERFAMILY Homeodomain-like 34 129 IPR009057 -
Vra5g2607 510 CDD SANT 37 82 IPR001005 -
Vra5g2607 510 CDD SANT 90 131 IPR001005 -
Vra5g2607 510 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 33 82 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2607 Vra-Chr5 32879357 32884651 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2607 30 507 MYB Transcription Factor Family AT5G06100 39.431 9.36e-103 316
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Vra5g2607 Myb_DNA-binding 4.3e-14 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2607 K09422 - gmx:100805804 809.675