Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2605 ATGAGCTGCCATGAAGCACACCAAAGGGCTGCAAAATCTGTTTGCTCTGTTTGCAATAACAGAAGACCACAGTTTGAAAGGAACAGAAAAAAAGAGTTCTCATATGCTGAGTTGTGTGCAGCCACACAAGGGTTTTCCCCTAAGAACTATATATCAGAAGGAGGGTTTGGTTCTGTCTATAAAGGGGAGTTGTTGTGTGGACAAAAGATTGCTGTCAAGCAACACACGTACGCTAACCAAAAGGGAGAGAAGGAATTCAAGTCTGAAGTTGATGTTCTCAGCAAAGCAATGCATGAGAATGTGGTCATGCTGTTAGGATCATGCGCAGAAGGGATTCATAGACTTCTTGTCTATGAATATGTCTGCAATGCTTCATTGGACCAACATTTATCTCAACATTGTCGTAAACTTCTTGATTGGCCAGATAGGGTGAAAGTAGCTGATGGTGCTGCCAAAGGACTGCTATACCTGCATGAGAATAACATAATACACAGAGATATGACAACAAACAACATTCTTCTTACACATGATTATGATGCAAGGCTAGGCGATTTTGGTTTGGCTAGAACTGTGACTGAAGGCTCCTCATACTGTACAGAATGTGTAGGGAATCTGACTTATATGGCACCAGAATATGCAGAATCTGGAAAAGTGTCAATAAAAACAGATGTGTATTCCTTTGGGGTGGTTCTACTACAGTTAATAACTGGAATGAGGACCACAGACAAACGACTTGGGGGTAAAGGTCTGGTGGAATGGGCTAGACCACTACTGAGGGAAGGAAAATGCCAAGATCTTATTGATGGGAGAATGATGAACTCCCATGATTGCCATCAACTCTATTGGATGAGCCGTCTAGCCGGAAATTGTCTTCAGAGGGATCCCGAAAAGAGATTGCATATGAGTACAGTGGTGAAGGCTTTAAATCAGATAGGAAAAGGTTGTAGCTGCATTGTGAGAAAAGATCATACCCTTCTAATCTCAGGCACTTCAAGGTCAAAAGATGATTCAGAGGAATCTTCACAATCAGAAGAGTGA 1038 0.4191 MSCHEAHQRAAKSVCSVCNNRRPQFERNRKKEFSYAELCAATQGFSPKNYISEGGFGSVYKGELLCGQKIAVKQHTYANQKGEKEFKSEVDVLSKAMHENVVMLLGSCAEGIHRLLVYEYVCNASLDQHLSQHCRKLLDWPDRVKVADGAAKGLLYLHENNIIHRDMTTNNILLTHDYDARLGDFGLARTVTEGSSYCTECVGNLTYMAPEYAESGKVSIKTDVYSFGVVLLQLITGMRTTDKRLGGKGLVEWARPLLREGKCQDLIDGRMMNSHDCHQLYWMSRLAGNCLQRDPEKRLHMSTVVKALNQIGKGCSCIVRKDHTLLISGTSRSKDDSEESSQSEE* 346
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2605 345 Gene3D Transferase(Phosphotransferase) domain 1 122 324 - -
Vra5g2605 345 PANTHER TYROSINE KINASE FAMILY PROTEIN 8 331 - -
Vra5g2605 345 Pfam Protein tyrosine and serine/threonine kinase 49 308 IPR001245 GO:0004672|GO:0006468
Vra5g2605 345 PANTHER OS01G0253100 PROTEIN 8 331 IPR045271 GO:0004714|GO:0006468
Vra5g2605 345 ProSitePatterns Tyrosine protein kinases specific active-site signature. 162 174 IPR008266 GO:0004672|GO:0006468
Vra5g2605 345 Gene3D Phosphorylase Kinase; domain 1 6 120 - -
Vra5g2605 345 PIRSF ILK 6 324 - -
Vra5g2605 345 ProSiteProfiles Protein kinase domain profile. 45 326 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2605 345 SUPERFAMILY Protein kinase-like (PK-like) 24 308 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2605 Vra-Chr5 32867136 32869499 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2605 28 311 Trihelix Transcription Factor Family AT5G38560 45.270 7.35e-81 258
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra5g2605 PK_Tyr_Ser-Thr 1.4e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2605 - - gmx:102663919 534.643