Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2603 ATGAGTGCAGAAACTCAGAGGGTAGTGGTGATCCAAGATGCATCAAGAGATGTTAGTTCAAAAGCTATCCTTGGAGCCCTGGAAAAGTTTTCAGTTAAAGCTGGAGATCAGCTTATAATTGTTGCTATCCTTGATTGGATTAGCAGTCCCAGTATGTTTTCTTTTCTTCCAAGAAAGCCTATGGGTTACATGGTCAGAGTTGATTCCAGTTCAATGATGATTTCAACAAACCAGAAAATAATTGGAAAATGGCATACCAAAAAAAAGAAAGAATATCTCATGAACGAGAACATCAAGGAGATTTCCAACTACTGTAAATTGAATGAGATTGGATTCCAAGTTGAAGTGCTTGTAGGCCCTACTGCAGAGGTTGCCTCTACTGCTGCCAAGGATTTTCGGGCCACAAGTTTGATTTTATTTAGACAGATCCACAAAGATATGAAGTATTTCATGCGCCGGCATCCTTGTGGCATGTATAGGATAACAAGTGACAATTCAATTGAGAGGTTGAAAGATCCAAAATCAACATCCAGCACCAAATCACTTGTTGACAGGCAAGAAAATGTAAGCTATAAAGAAATGTTTCCAGGAAGTGAAGAGGAAGAACGTTCTCTTCAGATGTGCAGGTCTTCATCAAGTGATATGTTGACATCAACTGGAGCCTCAAGTCAGTGGAGTACAGAAGTCTCCAATTCTAGTTTTGGAAGCTTCCGATATGGCCATCAACACCAAGAGGGAAATTTCTATTCAAATATAGAACAAGAAACAGCAGGGAACCGATCACTATTTCACATTTCAGAGAATGAAGAAATGAACCAATCGGAAGTAGATAAAAAAGAGAAACACGGTAGAAATAATGAAAAATCTCATATGGAGGAAGAATTTACAAATCCACTTTGTTCAGTGTGCAATAATCGACGACCAAAAGTTGGATTGCAGATAGATTTCACTTATGCAGAGCTCTTTGCTGCTACAAAAGGATTTTCTCCCAATAACTTTCTCTCAGAAGGAGGATTCGGATCTGTCTACAAAGGACTGCTTAATGGAATGAAGATTGCTGTTAAGCAACATAAAAATGCAGGTTTCCAAGGAGAGAAGGAGTTTAAGTCTGAAGTGAATTTACTTAGCAAAGCAAGACATGAGAATGTGGTTGTGCTGCTAGGTTCATGCTCAGAAGGAACTAATAGGCTTCTTGTGTATGAATATGTTTGCAATGGTTCACTTGACCAACATCTATCAGAACATTCTCGGTCACCTCTTAGTTGGGAAGATAGGATCAATATAGCAATTGGAGCTGCCAAAGGCTTACTATACTTACACAAGAATAAAATGATACACAGAGATGTGAGACCAAATAATATCCTTATAACACATGATCATCATCCATTGATAGGAGACTTTGGATTAGCAAGAAGTCAAAATGAAGACTCGATACACTCAACTGAAGTTGTTGGAACTTTGGGGTACTTGGCACCAGAATATGCAGAACATGGGAAAGTGTCTAGCAAAACAGATGTATACTCTTTTGGAGTGGTTCTACTGCAGCTAATAACAGGAATGAGAACTACAGATAAAAGACTTGGAGGAAGAAGTCTTGTGGGATGGGCAAGGCCACTTTTAAAAGAGAGGAACTATCCAGATTTAATTGATGAAAGAATCATTAAGGCTCATGATGTCCATCAACTATTTTGGATGGTTCGAATAGCTGAGAAATGTCTAAGCAGAGAGCCTCAAAGGAGACTAAATATGATTCAGGTTGTTGATGCTTTGACTGACATTGTGGAAGGCAGAACATGTGACAGCATCTTAAGAGATTACTCCCCAGCAAGGTCATATTCGATTTATAGTGCATCAGACTCTGATGAATCTGAAGATGAAATGAAGGAATCCTTCAAGTGCGAAGATGAATCACCAACTCACTGTTCAGAATTCATAGATAGTAATAGCACAAGTCAGATGATGCACATGAATTTAAGACAGCCACCATCTCCTCCAATTCAGAGCGTCTCTCTAAGTAGCTCAAGCTCGCATAATTTTCATGATGAGTCAACTAGTGGTGGTGAAGCAATAGAAATATCAAAATCCAATGGGGGTAGCTCAATTTCTAGATGCTAG 2115 0.3896 MSAETQRVVVIQDASRDVSSKAILGALEKFSVKAGDQLIIVAILDWISSPSMFSFLPRKPMGYMVRVDSSSMMISTNQKIIGKWHTKKKKEYLMNENIKEISNYCKLNEIGFQVEVLVGPTAEVASTAAKDFRATSLILFRQIHKDMKYFMRRHPCGMYRITSDNSIERLKDPKSTSSTKSLVDRQENVSYKEMFPGSEEEERSLQMCRSSSSDMLTSTGASSQWSTEVSNSSFGSFRYGHQHQEGNFYSNIEQETAGNRSLFHISENEEMNQSEVDKKEKHGRNNEKSHMEEEFTNPLCSVCNNRRPKVGLQIDFTYAELFAATKGFSPNNFLSEGGFGSVYKGLLNGMKIAVKQHKNAGFQGEKEFKSEVNLLSKARHENVVVLLGSCSEGTNRLLVYEYVCNGSLDQHLSEHSRSPLSWEDRINIAIGAAKGLLYLHKNKMIHRDVRPNNILITHDHHPLIGDFGLARSQNEDSIHSTEVVGTLGYLAPEYAEHGKVSSKTDVYSFGVVLLQLITGMRTTDKRLGGRSLVGWARPLLKERNYPDLIDERIIKAHDVHQLFWMVRIAEKCLSREPQRRLNMIQVVDALTDIVEGRTCDSILRDYSPARSYSIYSASDSDESEDEMKESFKCEDESPTHCSEFIDSNSTSQMMHMNLRQPPSPPIQSVSLSSSSSHNFHDESTSGGEAIEISKSNGGSSISRC* 705
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2603 704 PANTHER TYROSINE KINASE FAMILY PROTEIN 13 619 - -
Vra5g2603 704 ProSitePatterns Tyrosine protein kinases specific active-site signature. 444 456 IPR008266 GO:0004672|GO:0006468
Vra5g2603 704 ProSiteProfiles Protein kinase domain profile. 328 594 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2603 704 Gene3D Transferase(Phosphotransferase) domain 1 403 605 - -
Vra5g2603 704 Pfam Protein tyrosine and serine/threonine kinase 333 589 IPR001245 GO:0004672|GO:0006468
Vra5g2603 704 Gene3D Phosphorylase Kinase; domain 1 285 402 - -
Vra5g2603 704 MobiDBLite consensus disorder prediction 208 226 - -
Vra5g2603 704 MobiDBLite consensus disorder prediction 625 640 - -
Vra5g2603 704 MobiDBLite consensus disorder prediction 654 704 - -
Vra5g2603 704 SUPERFAMILY Protein kinase-like (PK-like) 314 612 IPR011009 -
Vra5g2603 704 SMART tyrkin_6 328 590 IPR020635 GO:0004713|GO:0006468
Vra5g2603 704 MobiDBLite consensus disorder prediction 270 292 - -
Vra5g2603 704 MobiDBLite consensus disorder prediction 615 640 - -
Vra5g2603 704 MobiDBLite consensus disorder prediction 169 226 - -
Vra5g2603 704 PANTHER OS01G0253100 PROTEIN 13 619 IPR045271 GO:0004714|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2603 Vra-Chr5 32849945 32855470 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2603 316 646 Trihelix Transcription Factor Family AT5G38560 42.151 2.22e-77 259
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra5g2603 PK_Tyr_Ser-Thr 5.5e-48 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2603 - - gsj:114417376 1076.23