Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2600 ATGAGTGAGCAAAAGATGGGGTTTGACCCATTGAATTGGTACTGCCAGCCAGCAGAAAACAGCGTTTGGGATAAAGCAGTGGACAGTGTTTTTGGACCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCAAATTTGGTTCTTATTGGCCTGTGCTTGTATCGGATATGGCTTATCATTTGCAATGCAAAGGTCGAGAGGTTTTGTTTGAGATCAAATTACTATAATTATCTTCTGGGAATGTTGGCTGCTTATTGTTCTGCTCAACCTTTGTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTCAGTGGTGAAACCGGCTTCGCTCCTTTTGAGATAGCGGAACTGGTTGTTGAAACACTTACTTGGAGCTCAATGATAGCTCTCATCCTCTTGGAAACAAAGGTTTATATCAGAAAATTGAGATGGTTGGTGCGTTGTGGAGTTATATATGTTTTGGTGGGAGATATTGTAGTGCTTAACCTTCTTCTATCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTGCCTTACTTTTTGTTTACATTCCTGATTTGATTCCTTATTCTGGTCATTCAACAATGCAAACTGATGTACCCGACCATGGTGAATATGAACCTCTTTGTGGAGAAGATCAAGTTTGCCCTGAGAGGCAAGCCAATGTATTCTCCAGAATATGTTTTGGATGGATAACTCCACTCATGAAGCAAGGCTACAGAAAACCCGTAACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATGAAACAGAGACATTAACTGAGAAGTTTCAGAACTGTTGGATGTTAGAATTTCAAAGCTCTAACCCGTGTCTTTTAAGAGCTTTGAACAGGAGCCTGGGGAAAAGGTTTTGGATGGGAGGCTTCTTTAAGATTGGTAACGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCACCTATTAGATTCAATGCAAAGAGGAGATCCATCCTGGATTGGTTACATCTACGCCTTCTCTATATTTGTTGGAGTGACAGCTGGTGTTCTTTCTGAAGCACAGTATTTTCAGAATGTCATGCGTGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCCTTAAGGCTAACTAATGATGGTCGAAAGAAGTGCACATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTGCAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTATACCAGCAACTGGGGGTTGCTTCACTTGTTGGATCATTAATGTTAGTCCTTATTATCCCACTGCAGACATTTGTGATTAGCAAGATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAATGAAATTCTTGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTCCAGTCCAGAATTCTAAGCATACGAGATGACGAGCTATCGTGGTTCCGCAAAGCCCAGCTGCTATATGCTCTAAATTCTTTTATACTAAACAGCATCCCTGTTCTTGTGACGGTGACCACATTCGGAATTTTCACTTTACTGGGTGGAGAATTGACACCTGCAAGAGCATTTACCTCATTATCTCTGTTTGCAGTTTTGCGCTTTCCTTTAAATATGCTTCCAAACTTACTAAGTCAGGTAGCAAATGCAAATGTCTCGTTACAACGTTTGGAGGAACTGTTCTTAGATGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCTGGTCTTCCAGCCATTTCAATTGAGAATGGATACTTTTCGTGGGATCCTAAGGAGGAGAAACCAACATTATCAAATATCAATGTGGAAATACCAGTAGGCAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGCAAAACGTCTCTTATTTCAGCAATGATTGGAGAGTTACCACCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTGCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATACTATTTGGATCAAAATTCGAGCATGAACGATATCGGAAAGTCATTGATATCACTGCTTTACAGCATGATCTCAACTTACTACCTGGACTTGATTTTACAGAGATTGGAGAAAGAGGAGTCAACATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCCAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCATTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGAGAGGAAAAACCAGGGTTCTTGTCACCAATCAGCTACATTTTCTCCCTCCGGTGGATAAAATCATTCTTGTTAGTGAAGGCATGATTAAGGAGCAGGGAACATTTGAGGAGTTGTCAAAAAGTGGGCCTCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAAGCAGATAATAACGGAGACAGTGAAAGTCATGACAAGGATACAAATTTACCCTTGAATAATGAAGCAATTGTTGAATTACCAAGTGATGCAAGCTATGAGAAGAAAGGAAAATTACGAAAATCAGTACTTGTTAAGAAAGAGGAAAGGGAAACAGGGGTGATTAGTTGGAAAGTCATAACGAGGTACAAATCAGCACTGGGAGGACTGTGGGTAGTTTCCATACTCTTTGGATGTTACACATTAACAGAAGTTCTCCGAATTTCAAGTAGCACATGGCTAAGCGTGTGGACATCTCAAGATTCCACTGCAGATAATAATGCGGCATATTTTCTTTTGATCTATACGCTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCCAACTCTTATTGGTTGATCGTTTCTAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGATAAAATCCTCCGGGCTCCTATGTTATTCTTCCAAACTAATCCGGTTGGTCGGATAATTAATAGGTTTGCAAAAGACACGGGAGATATAGATACCAATGTTTTTAACTTGGTGAACATGTTTCTGGGGCAAGTTTGGCAACTGCTTTCCACATTTGTTCTTATAGGCACTGTGAGCACCATTTCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTATCAGAGCACGGCTCGAGAGGTAAAGCGGATGGATTCAATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATCCGTGCTTATAAAGCATATGACAGAATGGCACACATCAATGGAAAATTCATGGATAACAACATCAGATTCACTCTTGTGAACATAAGTTCAAATCGTTGGCTCACCATAAGGCTTGAAACATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCAGTCATGCAGAATGCAAGAGCTTCAAACCAGGCTTTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTAAACATAACAAATCTCTTAAGTGGTGTCCTTAGGCAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGTGTTGACACATATATAAGTTTGGAAACTGAGGCTCCAGGTGTAATTGAGACCAGCCGTCCCCCACCCGGATGGCCAACCTCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGATTGTCCTTCACAGTACCTCCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCACTATTTCGGATTGTGGAACTGACAAAAGGAAGAATCATTATTGATGGCTGTGATATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAGTCTCCAGTTGTTTTCTCTGGGACTGTTCGTTTCAATCTTGATCCATTTAATGAGCACAATGATGCTGATCTATGGGAGGCTTTAGAAAGGGCACATCTGAAGGACGTAATAAGAAGAAATCCATTTGGTCTTGATGCTCAGGTTTCAGAGGGAGGAGATAATTTCAGTGTTGGACAGAGGCAACTGCTGAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTCATACAGAAAACTATCAGACAGGAATTTCAGTCATGTACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGCCGGGTTCTTGAATACAGTTCACCAGAGGAACTCCTACAAAATGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACCGGTGAAGCAAATGCTCAGTATCTATGTAGCCTAGTATTTGGAAGAACAGAGAACAATAACGAATATAACAAGGAGTTGGAAAACCATATGAGACAATTAGCTTCTACTCACTGGACTGCTGCTACCCAGTTTGCCATAGCTGCTACCCTTTCTTCATTACACCATCTGCTTCCAAAACCAAGTAGTGAAGACAATGAAGATATCCTTGATAAAACAAAGGATGCAGTTACAATACTTCAAGAGGTTCTGGTGGGGAAGCATGATGAAGCCATAGAAGAGACACTGCATAAATACCATATTCCTACAGATACATGGTGGTCTACTCTCTACAAAGTTATTGAAGGTCTTGCTATCTTGAAGAGGTTGCCTAAAGACAACATTCATCAAATACAACTTGATTTTGACGGAAGATCTTCTAATTAA 4863 0.407 MSEQKMGFDPLNWYCQPAENSVWDKAVDSVFGPYTPCAINTLVISISNLVLIGLCLYRIWLIICNAKVERFCLRSNYYNYLLGMLAAYCSAQPLLRLLTGNSAFNLSGETGFAPFEIAELVVETLTWSSMIALILLETKVYIRKLRWLVRCGVIYVLVGDIVVLNLLLSVKDYCSRSALFLYISSVICQVLFGALLFVYIPDLIPYSGHSTMQTDVPDHGEYEPLCGEDQVCPERQANVFSRICFGWITPLMKQGYRKPVTEKDVWKLDKWDETETLTEKFQNCWMLEFQSSNPCLLRALNRSLGKRFWMGGFFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTAGVLSEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKKCTSGKLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLVGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNSFILNSIPVLVTVTTFGIFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLDEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEHERYRKVIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPPVDKIILVSEGMIKEQGTFEELSKSGPLFQRLMENAGKMEQQADNNGDSESHDKDTNLPLNNEAIVELPSDASYEKKGKLRKSVLVKKEERETGVISWKVITRYKSALGGLWVVSILFGCYTLTEVLRISSSTWLSVWTSQDSTADNNAAYFLLIYTLFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMLFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVMQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYISLETEAPGVIETSRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGCDISTFGLADLRKVLTIIPQSPVVFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGEANAQYLCSLVFGRTENNNEYNKELENHMRQLASTHWTAATQFAIAATLSSLHHLLPKPSSEDNEDILDKTKDAVTILQEVLVGKHDEAIEETLHKYHIPTDTWWSTLYKVIEGLAILKRLPKDNIHQIQLDFDGRSSN* 1621
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2600 1620 Coils Coil 579 606 - -
Vra5g2600 1620 SMART AAA_5 647 827 IPR003593 -
Vra5g2600 1620 SMART AAA_5 1270 1463 IPR003593 -
Vra5g2600 1620 PANTHER ATP-BINDING CASSETTE SUB-FAMILY C 42 1499 - -
Vra5g2600 1620 PANTHER ABC TRANSPORTER C FAMILY MEMBER 11-RELATED 42 1499 - -
Vra5g2600 1620 CDD ABCC_MRP_domain1 620 820 - -
Vra5g2600 1620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 309 588 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2600 1620 SUPERFAMILY ABC transporter transmembrane region 911 1224 IPR036640 GO:0005524|GO:0016021
Vra5g2600 1620 Pfam ABC transporter 638 773 IPR003439 GO:0005524
Vra5g2600 1620 Pfam ABC transporter 1261 1409 IPR003439 GO:0005524
Vra5g2600 1620 CDD ABC_6TM_ABCC_D2 923 1219 IPR044726 GO:0140359
Vra5g2600 1620 Pfam ABC transporter transmembrane region 925 1174 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2600 1620 Pfam ABC transporter transmembrane region 309 576 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2600 1620 Gene3D - 1228 1480 IPR027417 -
Vra5g2600 1620 ProSitePatterns ABC transporters family signature. 746 760 IPR017871 GO:0005524
Vra5g2600 1620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 1244 1478 IPR003439 GO:0005524
Vra5g2600 1620 ProSitePatterns ABC transporters family signature. 1381 1395 IPR017871 GO:0005524
Vra5g2600 1620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1235 1477 IPR027417 -
Vra5g2600 1620 Gene3D ABC transporter type 1, transmembrane domain 297 599 IPR036640 GO:0005524|GO:0016021
Vra5g2600 1620 SUPERFAMILY ABC transporter transmembrane region 300 600 IPR036640 GO:0005524|GO:0016021
Vra5g2600 1620 CDD ABCC_MRP_domain2 1242 1462 - -
Vra5g2600 1620 ProSiteProfiles ABC transporter integral membrane type-1 fused domain profile. 925 1207 IPR011527 GO:0005524|GO:0016021|GO:0055085|GO:0140359
Vra5g2600 1620 Gene3D - 600 870 IPR027417 -
Vra5g2600 1620 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 616 843 IPR027417 -
Vra5g2600 1620 Gene3D ABC transporter type 1, transmembrane domain 885 1225 IPR036640 GO:0005524|GO:0016021
Vra5g2600 1620 ProSiteProfiles ATP-binding cassette, ABC transporter-type domain profile. 620 844 IPR003439 GO:0005524
Vra5g2600 1620 CDD ABC_6TM_ABCC_D1 311 596 IPR044746 GO:0140359
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2600 Vra-Chr5 32822757 32836176 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2600 565 843 Calmodulin-binding Proteins AT2G36910 25.249 1.06e-22 104
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2600 - K05665 gmx:100811691 2912.48