Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
---|---|---|---|---|---|---|
Vra5g2600 | ATGAGTGAGCAAAAGATGGGGTTTGACCCATTGAATTGGTACTGCCAGCCAGCAGAAAACAGCGTTTGGGATAAAGCAGTGGACAGTGTTTTTGGACCCTATACACCTTGTGCAATCAACACTCTTGTTATCTCCATTTCAAATTTGGTTCTTATTGGCCTGTGCTTGTATCGGATATGGCTTATCATTTGCAATGCAAAGGTCGAGAGGTTTTGTTTGAGATCAAATTACTATAATTATCTTCTGGGAATGTTGGCTGCTTATTGTTCTGCTCAACCTTTGTTGAGATTGTTAACTGGAAATTCAGCTTTCAACCTCAGTGGTGAAACCGGCTTCGCTCCTTTTGAGATAGCGGAACTGGTTGTTGAAACACTTACTTGGAGCTCAATGATAGCTCTCATCCTCTTGGAAACAAAGGTTTATATCAGAAAATTGAGATGGTTGGTGCGTTGTGGAGTTATATATGTTTTGGTGGGAGATATTGTAGTGCTTAACCTTCTTCTATCAGTGAAAGATTACTGCAGCAGATCTGCTCTGTTTCTGTACATTAGCAGTGTCATCTGCCAGGTGTTGTTTGGTGCCTTACTTTTTGTTTACATTCCTGATTTGATTCCTTATTCTGGTCATTCAACAATGCAAACTGATGTACCCGACCATGGTGAATATGAACCTCTTTGTGGAGAAGATCAAGTTTGCCCTGAGAGGCAAGCCAATGTATTCTCCAGAATATGTTTTGGATGGATAACTCCACTCATGAAGCAAGGCTACAGAAAACCCGTAACTGAAAAGGATGTTTGGAAGCTAGACAAATGGGATGAAACAGAGACATTAACTGAGAAGTTTCAGAACTGTTGGATGTTAGAATTTCAAAGCTCTAACCCGTGTCTTTTAAGAGCTTTGAACAGGAGCCTGGGGAAAAGGTTTTGGATGGGAGGCTTCTTTAAGATTGGTAACGATCTTTCTCAGTTTGTGGGACCTATTTTGCTGAATCACCTATTAGATTCAATGCAAAGAGGAGATCCATCCTGGATTGGTTACATCTACGCCTTCTCTATATTTGTTGGAGTGACAGCTGGTGTTCTTTCTGAAGCACAGTATTTTCAGAATGTCATGCGTGTTGGTTTTCGGCTTAGATCAACTTTGGTGGCTGCTATATTTAGAAAATCCTTAAGGCTAACTAATGATGGTCGAAAGAAGTGCACATCTGGGAAGCTTATGAATATGATAACAACAGATGCCAATGCATTGCAGCAAATATGTCAACAACTTCATGGACTATGGTCAGCACCATTCCGTATCACTGTAGCTATGGTTCTCCTATACCAGCAACTGGGGGTTGCTTCACTTGTTGGATCATTAATGTTAGTCCTTATTATCCCACTGCAGACATTTGTGATTAGCAAGATGCGAAAACTGACAAAGGAAGGACTGCAACAGACAGACAAAAGGGTTGGTCTGATGAATGAAATTCTTGCTGCCATGGATACTGTAAAATGTTATGCATGGGAAACAAGCTTCCAGTCCAGAATTCTAAGCATACGAGATGACGAGCTATCGTGGTTCCGCAAAGCCCAGCTGCTATATGCTCTAAATTCTTTTATACTAAACAGCATCCCTGTTCTTGTGACGGTGACCACATTCGGAATTTTCACTTTACTGGGTGGAGAATTGACACCTGCAAGAGCATTTACCTCATTATCTCTGTTTGCAGTTTTGCGCTTTCCTTTAAATATGCTTCCAAACTTACTAAGTCAGGTAGCAAATGCAAATGTCTCGTTACAACGTTTGGAGGAACTGTTCTTAGATGAGGAGCGAAATTTAAAACAAAATCCACCTATTGAACCTGGTCTTCCAGCCATTTCAATTGAGAATGGATACTTTTCGTGGGATCCTAAGGAGGAGAAACCAACATTATCAAATATCAATGTGGAAATACCAGTAGGCAGCTTAGTTGCAATCATTGGTGGTACTGGAGAAGGCAAAACGTCTCTTATTTCAGCAATGATTGGAGAGTTACCACCTTTAGCCGATGGAAATGCTACAATCAGAGGCACTGTTGCTTATGTGCCTCAGATTTCATGGATTTACAATGCCACAGTTCGTGAAAACATACTATTTGGATCAAAATTCGAGCATGAACGATATCGGAAAGTCATTGATATCACTGCTTTACAGCATGATCTCAACTTACTACCTGGACTTGATTTTACAGAGATTGGAGAAAGAGGAGTCAACATTAGTGGTGGACAAAAGCAAAGAGTTTCCATAGCCAGGGCTGTATACTCAAATTCAGATGTATATATATTTGATGATCCATTGAGTGCTCTTGATGCTCATATTGCTCAAGAGGTTTTCAGGAACTGTATAAAGGAAGGGCTGAGAGGAAAAACCAGGGTTCTTGTCACCAATCAGCTACATTTTCTCCCTCCGGTGGATAAAATCATTCTTGTTAGTGAAGGCATGATTAAGGAGCAGGGAACATTTGAGGAGTTGTCAAAAAGTGGGCCTCTATTTCAGAGACTAATGGAAAATGCTGGGAAAATGGAACAACAAGCAGATAATAACGGAGACAGTGAAAGTCATGACAAGGATACAAATTTACCCTTGAATAATGAAGCAATTGTTGAATTACCAAGTGATGCAAGCTATGAGAAGAAAGGAAAATTACGAAAATCAGTACTTGTTAAGAAAGAGGAAAGGGAAACAGGGGTGATTAGTTGGAAAGTCATAACGAGGTACAAATCAGCACTGGGAGGACTGTGGGTAGTTTCCATACTCTTTGGATGTTACACATTAACAGAAGTTCTCCGAATTTCAAGTAGCACATGGCTAAGCGTGTGGACATCTCAAGATTCCACTGCAGATAATAATGCGGCATATTTTCTTTTGATCTATACGCTTTTCTCATTTGGACAGGTATCTGTGGCACTTGCCAACTCTTATTGGTTGATCGTTTCTAGTCTTCGTGCTGCCAAAAGATTGCACAATGCAATGCTGGATAAAATCCTCCGGGCTCCTATGTTATTCTTCCAAACTAATCCGGTTGGTCGGATAATTAATAGGTTTGCAAAAGACACGGGAGATATAGATACCAATGTTTTTAACTTGGTGAACATGTTTCTGGGGCAAGTTTGGCAACTGCTTTCCACATTTGTTCTTATAGGCACTGTGAGCACCATTTCCCTGTGGGCCATAATGCCACTTCTGATCTTCTTTTATGCAGCTTATATATATTATCAGAGCACGGCTCGAGAGGTAAAGCGGATGGATTCAATTACAAGATCTCCTGTTTATGCACATTTTGGTGAATCACTGAATGGTTTGTCAAGCATCCGTGCTTATAAAGCATATGACAGAATGGCACACATCAATGGAAAATTCATGGATAACAACATCAGATTCACTCTTGTGAACATAAGTTCAAATCGTTGGCTCACCATAAGGCTTGAAACATTAGGAGGCCTCATGATTTGGCTGATAGCAACATCTGCAGTCATGCAGAATGCAAGAGCTTCAAACCAGGCTTTGTTTGCATCTACAATGGGTTTACTTCTCAGTTATACTTTAAACATAACAAATCTCTTAAGTGGTGTCCTTAGGCAAGCAAGTAGAGCTGAAAACAGTTTAAATGCTGTTGAGCGTGTTGACACATATATAAGTTTGGAAACTGAGGCTCCAGGTGTAATTGAGACCAGCCGTCCCCCACCCGGATGGCCAACCTCAGGATCAATTGAGTTTGAGGATGTTGTTCTGAGATACCGGCCTGAACTTCCTCCAGTGCTGCATGGATTGTCCTTCACAGTACCTCCAACTGAGAAGATAGGTGTAGTTGGAAGAACTGGTGCAGGAAAATCTAGCATGCTTAATGCACTATTTCGGATTGTGGAACTGACAAAAGGAAGAATCATTATTGATGGCTGTGATATTTCTACATTTGGACTAGCAGATCTACGAAAAGTTCTTACTATCATACCACAGTCTCCAGTTGTTTTCTCTGGGACTGTTCGTTTCAATCTTGATCCATTTAATGAGCACAATGATGCTGATCTATGGGAGGCTTTAGAAAGGGCACATCTGAAGGACGTAATAAGAAGAAATCCATTTGGTCTTGATGCTCAGGTTTCAGAGGGAGGAGATAATTTCAGTGTTGGACAGAGGCAACTGCTGAGTCTAGGTAGAGCATTGCTTCGAAGATCGAAGGTTCTTGTCCTGGATGAAGCTACTGCTGCTGTAGATGTTAGAACTGATGCCCTCATACAGAAAACTATCAGACAGGAATTTCAGTCATGTACAATGCTCATCATTGCACACAGACTAAATACAATCATTGACTGCAATCGGATTCTGCTGCTTGATTCTGGCCGGGTTCTTGAATACAGTTCACCAGAGGAACTCCTACAAAATGAAGGAACTGCTTTCTACAAGATGGTTCAAAGTACCGGTGAAGCAAATGCTCAGTATCTATGTAGCCTAGTATTTGGAAGAACAGAGAACAATAACGAATATAACAAGGAGTTGGAAAACCATATGAGACAATTAGCTTCTACTCACTGGACTGCTGCTACCCAGTTTGCCATAGCTGCTACCCTTTCTTCATTACACCATCTGCTTCCAAAACCAAGTAGTGAAGACAATGAAGATATCCTTGATAAAACAAAGGATGCAGTTACAATACTTCAAGAGGTTCTGGTGGGGAAGCATGATGAAGCCATAGAAGAGACACTGCATAAATACCATATTCCTACAGATACATGGTGGTCTACTCTCTACAAAGTTATTGAAGGTCTTGCTATCTTGAAGAGGTTGCCTAAAGACAACATTCATCAAATACAACTTGATTTTGACGGAAGATCTTCTAATTAA | 4863 | 0.407 | MSEQKMGFDPLNWYCQPAENSVWDKAVDSVFGPYTPCAINTLVISISNLVLIGLCLYRIWLIICNAKVERFCLRSNYYNYLLGMLAAYCSAQPLLRLLTGNSAFNLSGETGFAPFEIAELVVETLTWSSMIALILLETKVYIRKLRWLVRCGVIYVLVGDIVVLNLLLSVKDYCSRSALFLYISSVICQVLFGALLFVYIPDLIPYSGHSTMQTDVPDHGEYEPLCGEDQVCPERQANVFSRICFGWITPLMKQGYRKPVTEKDVWKLDKWDETETLTEKFQNCWMLEFQSSNPCLLRALNRSLGKRFWMGGFFKIGNDLSQFVGPILLNHLLDSMQRGDPSWIGYIYAFSIFVGVTAGVLSEAQYFQNVMRVGFRLRSTLVAAIFRKSLRLTNDGRKKCTSGKLMNMITTDANALQQICQQLHGLWSAPFRITVAMVLLYQQLGVASLVGSLMLVLIIPLQTFVISKMRKLTKEGLQQTDKRVGLMNEILAAMDTVKCYAWETSFQSRILSIRDDELSWFRKAQLLYALNSFILNSIPVLVTVTTFGIFTLLGGELTPARAFTSLSLFAVLRFPLNMLPNLLSQVANANVSLQRLEELFLDEERNLKQNPPIEPGLPAISIENGYFSWDPKEEKPTLSNINVEIPVGSLVAIIGGTGEGKTSLISAMIGELPPLADGNATIRGTVAYVPQISWIYNATVRENILFGSKFEHERYRKVIDITALQHDLNLLPGLDFTEIGERGVNISGGQKQRVSIARAVYSNSDVYIFDDPLSALDAHIAQEVFRNCIKEGLRGKTRVLVTNQLHFLPPVDKIILVSEGMIKEQGTFEELSKSGPLFQRLMENAGKMEQQADNNGDSESHDKDTNLPLNNEAIVELPSDASYEKKGKLRKSVLVKKEERETGVISWKVITRYKSALGGLWVVSILFGCYTLTEVLRISSSTWLSVWTSQDSTADNNAAYFLLIYTLFSFGQVSVALANSYWLIVSSLRAAKRLHNAMLDKILRAPMLFFQTNPVGRIINRFAKDTGDIDTNVFNLVNMFLGQVWQLLSTFVLIGTVSTISLWAIMPLLIFFYAAYIYYQSTAREVKRMDSITRSPVYAHFGESLNGLSSIRAYKAYDRMAHINGKFMDNNIRFTLVNISSNRWLTIRLETLGGLMIWLIATSAVMQNARASNQALFASTMGLLLSYTLNITNLLSGVLRQASRAENSLNAVERVDTYISLETEAPGVIETSRPPPGWPTSGSIEFEDVVLRYRPELPPVLHGLSFTVPPTEKIGVVGRTGAGKSSMLNALFRIVELTKGRIIIDGCDISTFGLADLRKVLTIIPQSPVVFSGTVRFNLDPFNEHNDADLWEALERAHLKDVIRRNPFGLDAQVSEGGDNFSVGQRQLLSLGRALLRRSKVLVLDEATAAVDVRTDALIQKTIRQEFQSCTMLIIAHRLNTIIDCNRILLLDSGRVLEYSSPEELLQNEGTAFYKMVQSTGEANAQYLCSLVFGRTENNNEYNKELENHMRQLASTHWTAATQFAIAATLSSLHHLLPKPSSEDNEDILDKTKDAVTILQEVLVGKHDEAIEETLHKYHIPTDTWWSTLYKVIEGLAILKRLPKDNIHQIQLDFDGRSSN* | 1621 |
Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
---|---|---|---|---|---|---|---|---|
Vra5g2600 | 1620 | Coils | Coil | 579 | 606 | - | - | |
Vra5g2600 | 1620 | SMART | AAA_5 | 647 | 827 | IPR003593 | - | |
Vra5g2600 | 1620 | SMART | AAA_5 | 1270 | 1463 | IPR003593 | - | |
Vra5g2600 | 1620 | PANTHER | ATP-BINDING CASSETTE SUB-FAMILY C | 42 | 1499 | - | - | |
Vra5g2600 | 1620 | PANTHER | ABC TRANSPORTER C FAMILY MEMBER 11-RELATED | 42 | 1499 | - | - | |
Vra5g2600 | 1620 | CDD | ABCC_MRP_domain1 | 620 | 820 | - | - | |
Vra5g2600 | 1620 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 309 | 588 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra5g2600 | 1620 | SUPERFAMILY | ABC transporter transmembrane region | 911 | 1224 | IPR036640 | GO:0005524|GO:0016021 | |
Vra5g2600 | 1620 | Pfam | ABC transporter | 638 | 773 | IPR003439 | GO:0005524 | |
Vra5g2600 | 1620 | Pfam | ABC transporter | 1261 | 1409 | IPR003439 | GO:0005524 | |
Vra5g2600 | 1620 | CDD | ABC_6TM_ABCC_D2 | 923 | 1219 | IPR044726 | GO:0140359 | |
Vra5g2600 | 1620 | Pfam | ABC transporter transmembrane region | 925 | 1174 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra5g2600 | 1620 | Pfam | ABC transporter transmembrane region | 309 | 576 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra5g2600 | 1620 | Gene3D | - | 1228 | 1480 | IPR027417 | - | |
Vra5g2600 | 1620 | ProSitePatterns | ABC transporters family signature. | 746 | 760 | IPR017871 | GO:0005524 | |
Vra5g2600 | 1620 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 1244 | 1478 | IPR003439 | GO:0005524 | |
Vra5g2600 | 1620 | ProSitePatterns | ABC transporters family signature. | 1381 | 1395 | IPR017871 | GO:0005524 | |
Vra5g2600 | 1620 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 1235 | 1477 | IPR027417 | - | |
Vra5g2600 | 1620 | Gene3D | ABC transporter type 1, transmembrane domain | 297 | 599 | IPR036640 | GO:0005524|GO:0016021 | |
Vra5g2600 | 1620 | SUPERFAMILY | ABC transporter transmembrane region | 300 | 600 | IPR036640 | GO:0005524|GO:0016021 | |
Vra5g2600 | 1620 | CDD | ABCC_MRP_domain2 | 1242 | 1462 | - | - | |
Vra5g2600 | 1620 | ProSiteProfiles | ABC transporter integral membrane type-1 fused domain profile. | 925 | 1207 | IPR011527 | GO:0005524|GO:0016021|GO:0055085|GO:0140359 | |
Vra5g2600 | 1620 | Gene3D | - | 600 | 870 | IPR027417 | - | |
Vra5g2600 | 1620 | SUPERFAMILY | P-loop containing nucleoside triphosphate hydrolases | 616 | 843 | IPR027417 | - | |
Vra5g2600 | 1620 | Gene3D | ABC transporter type 1, transmembrane domain | 885 | 1225 | IPR036640 | GO:0005524|GO:0016021 | |
Vra5g2600 | 1620 | ProSiteProfiles | ATP-binding cassette, ABC transporter-type domain profile. | 620 | 844 | IPR003439 | GO:0005524 | |
Vra5g2600 | 1620 | CDD | ABC_6TM_ABCC_D1 | 311 | 596 | IPR044746 | GO:0140359 |
Select | Gene | Chromosome | Start | End | Duplicated_type |
---|---|---|---|---|---|
Vra5g2600 | Vra-Chr5 | 32822757 | 32836176 | Dispersed/Wgd |
Select | Gene | Gene_start | Gene_end | Function | Ath_gene | Identity(%) | E-value | Score |
---|---|---|---|---|---|---|---|---|
Vra5g2600 | 565 | 843 | Calmodulin-binding Proteins | AT2G36910 | 25.249 | 1.06e-22 | 104 |
Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
---|---|---|---|---|---|---|
Vra5g2600 | - | K05665 | gmx:100811691 | 2912.48 |