Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2596 ATGCTCTCAGGGGCAAGGTCGCAGTGGCATTCCTCCCACGCCATCATCCATCAAACTTCTTCTTCATCTCATGCATACGACGTATTTGTCAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGCTCTTTGTCGACAAGGCATTCTTGCCTTCAAAGATGACCAATGTATTAGAAAAGGTGATTTCATAGCACCCGAGCTCCTACAAGCCATTCAGGGCTCTCAAGTTTTCGTTGTTGTTTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTACGTGAACTGGTTGAGATATTTAATTGCTGTGAAACTTCAGCAAGACCTGTTATACCTATATTTTATGATGTTGAGCCTACGACGGTGCGCTATCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAATAGATTCAGAGAAGATAAGGTGAAGATGGAGGAAGTTCAAACATGGAAAGAAGCTCTCAGAAAAGTGGCCGATATCTCTGGTTCGGAAATCGGAAATAAGCCACAAAATGAACAGATTGAAAAAATTGTTCAAGAGATAATAAATAATTTGAGACCAAAAATTTTAAATCTTCCTAGGGATGAACTAGTTGGGATAGAGGATCGACTTCAAGACTTAGGAAATATTTTGCATTTCGATCTCCTTAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAGACAACTCTTGCTCGGGCTTTATATGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGATGTAAGCAAAATATTTCTAGATTCTCGTTCGTTGGGCTTATAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGCAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTGAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTGAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTAAAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACCGTTGAATAGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGNTAATTANATTTTGAGCGATTATGAAAAGTTGGCACGTGAGATACTATCACATGTTGAAGGACATCCCTTGGCAATTGAAACAATTGGGTCATCTTTGCTTGGCCGAAGTTTGTCACATTGGAAAAGTGTATTGGAAGGGCTAAAAGAAAATAAAAGTAAAAATATTATGGGTATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTCTTATTATGAAAAAGATGTGAAGGAAATTCTAAATTTTCGTGGATTTCATCCTGAAGATAGCATACAGGTTCTCATTGATAAATCACTCATTACCAAAGATTTCAAAGGGTACATACGTATGCATAGCTTGCTAGTGGATTTGGGGAAGTGTATTGTTCGGGAAGTATCACCTAAAGTGCCTAGAAAGTGGAGTAGGCTGTGGACATACAAAGATTTCCATGATGCTATGTCAGAGAACAAGACAACTCGAAACCTTGAGGCAATAGTTCTTAGATATCACCTGGATGAGGATGAGGATGATGTTGAAATCCCAGATAAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAGTTGCTTTATGTTGAGAACGTGAAGGCGAACGTTAACTTTTCGGGAAGTCTGAATCATCTTTTGAATGAACTAGGATATCTTACTTGGTATAATTATCCGTTTGAATGTTTGCCTCAAAGTTTTCAACCACACAAACTAGTTGAGTTAAAGCTGCGTTGGAGTAGTATTCAACGATTATGGGAAGGCACAAAGTCGTTACCCAATTTGAAGCGTTTGGATCTCTTGCATTGCCAAAGTTTAGTTGAGATGCCAGATGTAACAGAGGCCCCAAATCTTCAATCGATACATCTTGAAGGATGTGGACAGCTCCAAAAACTGAATCCATCGATTGAGAGTCTGAGAAAGCTTGTTCTTTTGAATTTGAGATACTGCAAAAAACTAGTAATCTTATCTAATACTATATTGGGCCTGAAATCTCTTGAATATCTGGATGTCAGCTATTGTTCAATAATAGGTAGTAATTGGTTGAACACAGAGAACTTGATCAGATGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCAATCTAAGGTTCTGTAACTTAGTTCAAATTCCTGATTACATTGGAAAGTTAGGTTGCTTAGAGAGCCTAAATTTAGAGGAAAACAATTTTGTTAGATTGCCTAACCTGAAGGACCTTTTGAGACTGTATTATTTAAACTTACAGGATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACGAACTGTCACGAGATCTTCATCAATGTTTTTGAAAGTTGCAGGATTTATCATTTTCGGCTGCCCAGAATTAGTTGAGATTAAACAGTGCATTACAAAGAGTTTTTCATGGGCAATACAAATTTTTGAGGCGACCTACCAATACCAATGGATAGCTCGTGTAACTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACCAAGAATACCTGGACGAAAAAAACCTAATCGTTGATCCACCTCCCGTTCCGCATGACAATAATTTCATTGGTGTTTTGTGTTGCGTAATATTTCGTCTACACAATAGACATATTCCAATGGATTTTAGAAGAGATCACATGTGCTTACATTATGGAAAGGTTTCTATAGACGAACTAAAAAATGAACAAATTCCAATGGATTTTAGAAGAGATCACATGTGCTTACATTATGAAAAGGTTTCTATGGACGAACGTGGTATTCATCCTTATCATTTCCGTTTGAGGATGATTGACTTATTGTTGAGTTATAAGACTTCTAGGAATTTTGTTACGGTGAAGAAATTTCAGTATCGCTGGGTAAATGAAGAAGACCTAATTAACTTCAAAATGACGCATTGTGCAAATTTGACAGGTCGGAAGGGCAAGATTTCCGTAATTGAGGAAAACGGTTAG 3153 0.3739 MLSGARSQWHSSHAIIHQTSSSSHAYDVFVSFRGEDTRNNFTSFLFGALCRQGILAFKDDQCIRKGDFIAPELLQAIQGSQVFVVVLSKNYASSTWCLRELVEIFNCCETSARPVIPIFYDVEPTTVRYQKGCYEKAFAEHENRFREDKVKMEEVQTWKEALRKVADISGSEIGNKPQNEQIEKIVQEIINNLRPKILNLPRDELVGIEDRLQDLGNILHFDLLNDVRVVGISGMGGIGKTTLARALYERICHQYNYRCFIDDVSKIFLDSRSLGL*KQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVQQLRIFSGNRDNLLRECLGKGSRIIIVSRDEQILKIHGVDDIYQVRPLNRKDAIQLFCRNAFKXNXILSDYEKLAREILSHVEGHPLAIETIGSSLLGRSLSHWKSVLEGLKENKSKNIMGILRISYIQLEEKYKQTFLDIACFFNSYYEKDVKEILNFRGFHPEDSIQVLIDKSLITKDFKGYIRMHSLLVDLGKCIVREVSPKVPRKWSRLWTYKDFHDAMSENKTTRNLEAIVLRYHLDEDEDDVEIPDKTIKADGLSKIKHLKLLYVENVKANVNFSGSLNHLLNELGYLTWYNYPFECLPQSFQPHKLVELKLRWSSIQRLWEGTKSLPNLKRLDLLHCQSLVEMPDVTEAPNLQSIHLEGCGQLQKLNPSIESLRKLVLLNLRYCKKLVILSNTILGLKSLEYLDVSYCSIIGSNWLNTENLIRCLSPSSPLSCLCELNLRFCNLVQIPDYIGKLGCLESLNLEENNFVRLPNLKDLLRLYYLNLQDCKRLKYLPDLPSRTVTRSSSMFLKVAGFIIFGCPELVEIKQCITKSFSWAIQIFEATYQYQWIARVTIMPGSQIPSLFNNEFVNVDQEYLDEKNLIVDPPPVPHDNNFIGVLCCVIFRLHNRHIPMDFRRDHMCLHYGKVSIDELKNEQIPMDFRRDHMCLHYEKVSMDERGIHPYHFRLRMIDLLLSYKTSRNFVTVKKFQYRWVNEEDLINFKMTHCANLTGRKGKISVIEENG* 1051
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2596 1049 SUPERFAMILY L domain-like 507 822 - -
Vra5g2596 1049 PANTHER DISEASE RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 26 655 - -
Vra5g2596 1049 SMART till_3 25 168 IPR000157 GO:0007165
Vra5g2596 1049 Gene3D - 3 166 IPR035897 -
Vra5g2596 1049 Gene3D Ribonuclease Inhibitor 743 837 IPR032675 -
Vra5g2596 1049 Pfam NB-ARC domain 225 437 IPR002182 GO:0043531
Vra5g2596 1049 PRINTS Disease resistance protein signature 651 667 - -
Vra5g2596 1049 PRINTS Disease resistance protein signature 229 244 - -
Vra5g2596 1049 PRINTS Disease resistance protein signature 402 416 - -
Vra5g2596 1049 PRINTS Disease resistance protein signature 304 318 - -
Vra5g2596 1049 Gene3D Ribonuclease Inhibitor 567 740 IPR032675 -
Vra5g2596 1049 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 170 IPR035897 -
Vra5g2596 1049 ProSiteProfiles Leucine-rich repeat profile. 783 804 IPR001611 GO:0005515
Vra5g2596 1049 ProSiteProfiles TIR domain profile. 24 193 IPR000157 GO:0007165
Vra5g2596 1049 Gene3D - 367 451 IPR042197 -
Vra5g2596 1049 Gene3D - 171 361 IPR027417 -
Vra5g2596 1049 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 26 655 IPR044974 GO:0006952
Vra5g2596 1049 Pfam TIR domain 25 199 IPR000157 GO:0007165
Vra5g2596 1049 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 187 461 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2596 Vra-Chr5 32767248 32777305 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2596 21 826 WRKY Transcription Factor Family AT4G12020 28.814 1.24e-73 266
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2596 - - vra:106760531 1501.88