Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2594 TCTTCTGCTCCTCCTTCTACTTCTTACCAAACCAACCTCAACAATTTGTTCACTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATAGAACTTCTGGTGTTAATCAAGACATGGTTTATGGACTCTACCTTTGCCGTGGTGATGTGAACACCAGCCTTTGCAATGCTTGTGTCCAAAACTCTAGTATCTTGCTCATGCAGCACTGCCCCAACAATGCNTCTGCTATTCTCTGGNNCNNCTNTTGTNNTCTGAGGTACTCAAACGAGAATTTCTTTGGCAATCTCACCCTTAGGCCAAGGATTCCCATGTTTGATGCCACGCAGAATTCTACTAGTGCTGGAGAGTTTGACAGTGATGCTCAGGTTTTGATGAATGGTTTGATACAAATAGGGTCAGAGGCACCCTTGAAGTTTGGAACACATATGTTCAACATAAATGGCACTCAGAGAAGGTATGGTTGGGTGCAGTGCAGCAGAGACATTACAGCTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAGGATGTTGACAATTGCTGTCAGGAGAAGAAGGTGTGGCGTATCTTTTCTCCAAGTTGTATGGTTATGTATGAAACTCAGCCTTTCTTTTTGAATGGTACTGATTCTGCACCACCACCTCAGCAAGATAATGCAGCCACAGATGGGAATAACAGAAGGTGGTGGCTTATAGTAATCATTGTCGTAGCTGGAATTGTAGTACTAGCTCTATTGGCTATCAGCATATACTACTGCTGCTTGAAAAGGAAAAAAGACAAACAAANTANACAAGAGGAGGGACTAAATTCAATATTTTCACAAGAACAAACAGAAAAGGAGGAGAGTATGAACACTGACCTTCCTATGATACCTCTGAGTACTATTCTAAAATGTACAAACAATTTTTCTGATGAACAAAAACTGGGGAAAGGTGGATTTGGACCTGTCTATAAGGGTATATTACCAGATGGAAGACAAATTGCTGTTAAAAGGCTTTCGAAAACATCAGTTCAAGGTGGGGAGGAATTCAAGAATGAAGTAATATTGATTGCCAAATTGCAGCATCGCAATCTTGTGAGACTGTTGGCTGGCTGCATTGAGCAAAATGAAAAGCTGCTAGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACCTATTTGATACCGAGAAGGGTGTCCATCTGGATTGGAAAAATCGATTAAACATTATAAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCAAGATTAAGGGTTATTCACAGAGACCTGAAAGCTAGCAACATTTTGCTAGATCAAGAAATGAATCCTAAAATCTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAGGCAGGCCAACACAATTAGAGTTGTTGGAACATATGGATACATGGCTCCAGAGTATGCTATGGAAGGTTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAAAATGAGCTGTAAATTCTATCAGTCAGACAGAGGCCAAAGCCTTCTCGTATATGCATGGAACCTCTGGTGTGAAAGCAAAGGGTTGGAATTGATGGATCCATCAATAGAAAAATCAAGTGTACACAGTGAATTTGTGAAGTGTATGCACATTGGACTGTTGTGTGTGCAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAATGAGTCTTCCCAGCCCCACACGCCCTGCATTTTCTGTTGGAAGAGCAGCCATTGAAAGAGAATCTTCATCAAACACTTCTATGCATTACTCTCTCAATCAAATAACAGTCTCTGAAGTGATACCAAGGTGA 1872 0.4081 SSAPPSTSYQTNLNNLFTSLSSDSATSNGFGNRTSGVNQDMVYGLYLCRGDVNTSLCNACVQNSSILLMQHCPNNASAILWXXXCXLRYSNENFFGNLTLRPRIPMFDATQNSTSAGEFDSDAQVLMNGLIQIGSEAPLKFGTHMFNINGTQRRYGWVQCSRDITAEECRTCLSNMLEDVDNCCQEKKVWRIFSPSCMVMYETQPFFLNGTDSAPPPQQDNAATDGNNRRWWLIVIIVVAGIVVLALLAISIYYCCLKRKKDKQXXQEEGLNSIFSQEQTEKEESMNTDLPMIPLSTILKCTNNFSDEQKLGKGGFGPVYKGILPDGRQIAVKRLSKTSVQGGEEFKNEVILIAKLQHRNLVRLLAGCIEQNEKLLVYEFMPNSSLDFHLFDTEKGVHLDWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDQEMNPKISDFGLARTFGGDQRQANTIRVVGTYGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKMSCKFYQSDRGQSLLVYAWNLWCESKGLELMDPSIEKSSVHSEFVKCMHIGLLCVQEDAADRPTMSSVVHMLASDTMSLPSPTRPAFSVGRAAIERESSSNTSMHYSLNQITVSEVIPR* 624
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2594 623 SMART serkin_6 305 581 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2594 623 Gene3D Transferase(Phosphotransferase) domain 1 381 583 - -
Vra5g2594 623 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 9 620 - -
Vra5g2594 623 Pfam Protein tyrosine and serine/threonine kinase 308 576 IPR001245 GO:0004672|GO:0006468
Vra5g2594 623 Pfam Salt stress response/antifungal 5 91 IPR002902 -
Vra5g2594 623 Pfam Salt stress response/antifungal 111 203 IPR002902 -
Vra5g2594 623 Gene3D Phosphorylase Kinase; domain 1 266 380 - -
Vra5g2594 623 ProSiteProfiles Protein kinase domain profile. 305 577 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2594 623 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 9 620 - -
Vra5g2594 623 Pfam Domain of unknown function (DUF3403) 578 623 IPR021820 GO:0004674
Vra5g2594 623 ProSiteProfiles Gnk2-homologous domain profile. 1 94 IPR002902 -
Vra5g2594 623 ProSitePatterns Serine/Threonine protein kinases active-site signature. 426 438 IPR008271 GO:0004672|GO:0006468
Vra5g2594 623 CDD STKc_IRAK 311 576 - -
Vra5g2594 623 ProSiteProfiles Gnk2-homologous domain profile. 101 206 IPR002902 -
Vra5g2594 623 SUPERFAMILY Protein kinase-like (PK-like) 288 610 IPR011009 -
Vra5g2594 623 Gene3D - 1 94 IPR038408 -
Vra5g2594 623 Gene3D - 105 206 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2594 Vra-Chr5 32750246 32753621 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2594 7 623 Receptor kinase-like Gene Family AT4G05200 41.240 2.61e-171 502
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2594 PK_Tyr_Ser-Thr 7.6e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2594 - - var:108332673 1104.74