Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2590 ATGCTGATGATACACAGTGGTGATTGCAGCAAAAGAAGAATGATCTATCAGTGGTTATTCATCATCAAACTGGTATACATGATTGTTTGCTTTGTTGCTGCTCAGAACAGCAGCAACTCACAACAACCACTTGATTATAGATATGCTTGTTTGGACCAATCTTCTGCTCCTCCTTCTACTTCTTACCAAACCAACCTCAACAATTTGTTCACTTCCCTCTCATCTGATTCTGCTACCAGCAATGGTTTTGGGAATAGAACTTCTGGTGTTAATCAAGACATGGTTTATGGACTCTACCTTTGCCGTGGTGATGTGAACACCAGCCTTTGCAACACTTGTGTCCAAAACTCTAGCATCTTGCTCATGCAGCACTGCCCCAACAATGCTTCTGCTATTCTCTGGTACCTCTATTGTCGTCTGAGGTACTCAAACGAGAATTTCTTTGGCAATCTCACCCTTAGACCAAGGATTCCCATGTTTGATGCCACGCATAATTCTACTAGTGCTGGAGAGTTTGACAGTGATGCTCAGGTTTTGATGAATGGTTTGATACAAATAGGGTCAGAGGCACCCTTGAAGTTTGGAACACATATGTTCAACATAAATGGCACTCAGAGAAGGTATGGTTGGGTGCAGTGCAGCAGAGACATTACAGCTGAGGAATGCAGAACATGTTTGAGCAATATGCTTGAGGATGTTGACAATTGCTGTCAGGAGAAGAAGGTGTGGCGTATCTTTTCTCCTAGTTGCATAGTGATGTATGAAACTCAGCCTTTCTTTTTGAATGGTACTGATTCTGCACCACCACCTCAGCAAGATAATGCAGCCACAGATGGGAATAACAGAAGGTGGTGGCTTATAGTAATCATTGTCGTAGCTGGAATTGTAGTACTAGCTCTATTGGCTATCAGCATATACTACTGCTGCTTGAAAAGGAAAAAAGACAAACAAANTANACAAGAGGAGGGACTAAATTCAATATTTTCACAAGAACAAACAGAAAAGGAGGAGAGTATGAACACTGACCTTCCTATGATACCTCTGAGTACTATTCTAAAATGTACAAACAATTTTTCTGATGAACAAAAACTGGGGAAAGGTGGATTTGGACCTGTCTATAAGGGTATATTACCAGATGGAAGACAAATTGCTGTTAAAAGGCTTTCAAAAACATCAGTTCAAGGTGGGGAGGAATTCAAGAATGAAGTAATATTGATTGCCAAATTGCAGCATCGCAACCTTGTGAGACTGTTGGCTGGCTGCATTGAGCAAAATGAAAAGCTGCTAGTCTATGAATTCATGCCAAATTCAAGCCTTGATTTCCACCTATTTGATACCAAGAAGGGTGTCCATCTGGATTGGAAAAATCGATTAAACATTATAAATGGGATTGCTAAAGGGCTTCTATATCTACATGAAGACTCAAGATTAAGGGTTATTCACAGAGACCTGAAAGCTAGCAACATTCTGCTAGATCATGAAATGAATCCTAAAATCTCAGACTTTGGATTGGCAAGAACATTTGGAGGAGACCAGAGGCAGGCCAACACAATTAGAGTTGTTGGAACGTTTGGATACATGGCTCCAGAGTATGCTATGGAAGGTTTGTTTTCAGTGAAGTCAGATGTTTTCAGCTTTGGTGTTCTTTTGCTAGAGATCATCAGTGGAAAAATGAGCTGTAAATTTTATCAGTCAGACAGAGGCCAAAGCCTTCTCGTATATGCATGGAACCTCTGGTGTGAAAGCAAAGGGTTGGAATTGATGGATCCATCAATAGAAAAATCAAGTGTACACAGTGAAGTTGTGAAGTATATGCACATTGGACTGTTGTGTGTGCAAGAAGATGCAGCAGATAGACCAACAATGTCAAGTGTTGTTCATATGCTTGCAAGTGACACAATGAGTCTTCCCAGTCCCACACGCCCTGCATTTTCTGTTGGAAGAGCAGCCATTGAAAGAGAATCTTCATCAAACACTTCTATGCATTACTCTCTCAATCAAATAACAGTCTCTGAAGTGATACCAAGGTGA 2031 0.4072 MLMIHSGDCSKRRMIYQWLFIIKLVYMIVCFVAAQNSSNSQQPLDYRYACLDQSSAPPSTSYQTNLNNLFTSLSSDSATSNGFGNRTSGVNQDMVYGLYLCRGDVNTSLCNTCVQNSSILLMQHCPNNASAILWYLYCRLRYSNENFFGNLTLRPRIPMFDATHNSTSAGEFDSDAQVLMNGLIQIGSEAPLKFGTHMFNINGTQRRYGWVQCSRDITAEECRTCLSNMLEDVDNCCQEKKVWRIFSPSCIVMYETQPFFLNGTDSAPPPQQDNAATDGNNRRWWLIVIIVVAGIVVLALLAISIYYCCLKRKKDKQXXQEEGLNSIFSQEQTEKEESMNTDLPMIPLSTILKCTNNFSDEQKLGKGGFGPVYKGILPDGRQIAVKRLSKTSVQGGEEFKNEVILIAKLQHRNLVRLLAGCIEQNEKLLVYEFMPNSSLDFHLFDTKKGVHLDWKNRLNIINGIAKGLLYLHEDSRLRVIHRDLKASNILLDHEMNPKISDFGLARTFGGDQRQANTIRVVGTFGYMAPEYAMEGLFSVKSDVFSFGVLLLEIISGKMSCKFYQSDRGQSLLVYAWNLWCESKGLELMDPSIEKSSVHSEVVKYMHIGLLCVQEDAADRPTMSSVVHMLASDTMSLPSPTRPAFSVGRAAIERESSSNTSMHYSLNQITVSEVIPR* 677
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2590 676 Pfam Domain of unknown function (DUF3403) 631 676 IPR021820 GO:0004674
Vra5g2590 676 SUPERFAMILY Protein kinase-like (PK-like) 341 663 IPR011009 -
Vra5g2590 676 Gene3D Transferase(Phosphotransferase) domain 1 434 636 - -
Vra5g2590 676 CDD STKc_IRAK 364 629 - -
Vra5g2590 676 ProSiteProfiles Gnk2-homologous domain profile. 44 147 IPR002902 -
Vra5g2590 676 PANTHER RECEPTOR-LIKE SERINE/THREONINE-PROTEIN KINASE SD1-8 32 673 - -
Vra5g2590 676 SMART serkin_6 358 634 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2590 676 Gene3D Phosphorylase Kinase; domain 1 319 433 - -
Vra5g2590 676 ProSiteProfiles Gnk2-homologous domain profile. 154 259 IPR002902 -
Vra5g2590 676 Pfam Salt stress response/antifungal 165 256 IPR002902 -
Vra5g2590 676 Pfam Salt stress response/antifungal 55 144 IPR002902 -
Vra5g2590 676 ProSitePatterns Serine/Threonine protein kinases active-site signature. 479 491 IPR008271 GO:0004672|GO:0006468
Vra5g2590 676 PANTHER CYSTEINE-RICH RECEPTOR-LIKE KINASE 32 673 - -
Vra5g2590 676 ProSiteProfiles Protein kinase domain profile. 358 630 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2590 676 Pfam Protein tyrosine and serine/threonine kinase 361 629 IPR001245 GO:0004672|GO:0006468
Vra5g2590 676 Gene3D - 158 259 IPR038408 -
Vra5g2590 676 Gene3D - 44 147 IPR038408 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2590 Vra-Chr5 32713828 32721003 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2590 40 676 Receptor kinase-like Gene Family AT4G05200 40.150 4.75e-169 498
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_DLSV Vra5g2590 PK_Tyr_Ser-Thr 5.1e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2590 - - var:108332673 1216.06