Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2588 ATGGCATCTTCACATGATTTGGAAGATTATTCATCCGAAGCCTCAAGCACCTCACAAGACATTCATAAATCTAATGCTGAAGAAGAGAAGAAGCATGAGGTGACAACAATGAAGGAGAAAGGTATCAAATTTGAGGAAAGTAATAAGGTTTCCAATTCCAAAACTCACATGGTGTTAGATTTTGTTAAGTTTTCCAATGATCAAACACTTTGTGGGTCAAAAGTGGAATTGGATTTTTTCAATGCCAAGGGTTCATCTTCTAGGGCAAATCACACTCAAGGAAGAGATGAACACAACAAAGAGGAGAAGCCATCGTCAGAAACCAACAAGACCTTTTCCTGCAACTTCTGTCAGAAAGAGTTTTCTTCTTCACAAGCATTGGGAGGACACCAGAATGCCCATAAACAAGAACGTGCCCTAGCAAAACGAAGACAAGGGATTGATGGTGGTGCTTTTGGGAACCCTCATTTTCTCTATTACCCTTATAATCCCACACACTCTTTCTATGGATCTTACAATAGGGCACTTGGGGTTCGAATGGAGTCAATGATTCACAAACCTATGTATCCTTCATCTTCTTCACTAGGTTTAAGGTTTGGTCAAGGGTTGTCGAGACCAGATACGATGAACTCTTCTTGTTCTTCTTCTGCTGTTGGTTTGCAAGCAAATGCTGGAATCAAGATTATGGGGACTGACACAACTTTTAGGGCACAACGTGATCATGGTAATAATACCAGACACAGTATTCCATTCCTTGCAGAATCTTCTGCAAATGTCACTGCCAAAGCAAATTTGACTCCGTTGAATCATGTGGAGGACAATGATGATGATCACACCAAGATAGAAGGAACTTCAAATCCTAGTTCTTCAGATGAAATTGATTTGTCACTTAAACTTTAG 900 0.4 MASSHDLEDYSSEASSTSQDIHKSNAEEEKKHEVTTMKEKGIKFEESNKVSNSKTHMVLDFVKFSNDQTLCGSKVELDFFNAKGSSSRANHTQGRDEHNKEEKPSSETNKTFSCNFCQKEFSSSQALGGHQNAHKQERALAKRRQGIDGGAFGNPHFLYYPYNPTHSFYGSYNRALGVRMESMIHKPMYPSSSSLGLRFGQGLSRPDTMNSSCSSSAVGLQANAGIKIMGTDTTFRAQRDHGNNTRHSIPFLAESSANVTAKANLTPLNHVEDNDDDHTKIEGTSNPSSSDEIDLSLKL* 300
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2588 299 MobiDBLite consensus disorder prediction 90 107 - -
Vra5g2588 299 MobiDBLite consensus disorder prediction 22 49 - -
Vra5g2588 299 SUPERFAMILY beta-beta-alpha zinc fingers 109 139 IPR036236 -
Vra5g2588 299 Gene3D Classic Zinc Finger 87 148 - -
Vra5g2588 299 ProSiteProfiles Zinc finger C2H2 type domain profile. 112 139 IPR013087 -
Vra5g2588 299 MobiDBLite consensus disorder prediction 1 21 - -
Vra5g2588 299 MobiDBLite consensus disorder prediction 283 299 - -
Vra5g2588 299 PANTHER C2H2 AND C2HC ZINC FINGERS SUPERFAMILY PROTEIN 9 299 IPR044246 GO:0009788
Vra5g2588 299 PANTHER ZINC FINGER PROTEIN 3-LIKE 9 299 - -
Vra5g2588 299 MobiDBLite consensus disorder prediction 268 299 - -
Vra5g2588 299 MobiDBLite consensus disorder prediction 1 49 - -
Vra5g2588 299 MobiDBLite consensus disorder prediction 84 109 - -
Vra5g2588 299 ProSitePatterns Zinc finger C2H2 type domain signature. 114 134 IPR013087 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2588 Vra-Chr5 32692872 32693771 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2588 105 187 C2H2 Transcription Factor Family AT5G10970 55.294 9.37e-21 87.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g2588 None None None
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2588 - - gmx:102663393 350.903
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2588 5 32692872 32693771 Vra5g2588 5 32692872 32693771 ECH