Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2587 ATGAGGAAGAAGCTCGACACCCGTTTCCCCGCTGCTCGGATAAAGAAGATAATGCAAGCAGATGAGGATGTCGGAAAGATAGCATTGGCAGTTCCTGTTTTAGTATCTAAAGCTTTGGAGTTATTTTTGCAAGATCTTTGTGACCGCACTTATGAAATAACTCTTCAGAGAGGAGCAAAGACCATGAATGCACTGCATTTGAAACATTGTGTACATAGTTATAACGTCTTCGACTTTCTGAGAGACATTGTCAGCAGGGTTCCTGACTATGGGCATGGACATGGCCATTCTGAGGCTGGAGCTGATGATCGCGCCCTTTCAAAGAGAAGGAAAGCTGCTGGCGTTGAGGGCAATGAAAGTGATGAAGAGGCCAAGAGGAGTAAGATGCACGAGTTGGGCCACACCAGCACTCCTGGTAGGGGAAGAGGCCGAGGTAAAGGGAGAGGCCGTGGACGAGGGGTTCGAACTGTTGAAAGAGACATCATTCATCAGCAGGTTGAATCTGAGCCTTGCTCCTCTATTCAACAAATTAGCAATGATATGCCTAACACAAGTCTGCCAATAGATAATGGTGTGCAATTCAAGGAGTACTCAAAGGAGACTTCTGCAGCTCATGAGGAAAGTGCTCAGTCTTTCCGTAACATTGATCTGAATGCTAACTTAAACGAAAATGAAGACAAAAATGCCAGTGCAGCTGTTGAAGCTCCATTGCCTGAGCCTGCTGACATGGACATTAAACATGAAGAAATTCCAGGCTGGTCCCTATTGAACGCCGACAAGATGGCCATTGACACTATGCAACTGGCAACCCTCGGTAGTAGACTAGAAGAGGATGATGAAGATTATGATGAGGAAGGGTAA 861 0.4588 MRKKLDTRFPAARIKKIMQADEDVGKIALAVPVLVSKALELFLQDLCDRTYEITLQRGAKTMNALHLKHCVHSYNVFDFLRDIVSRVPDYGHGHGHSEAGADDRALSKRRKAAGVEGNESDEEAKRSKMHELGHTSTPGRGRGRGKGRGRGRGVRTVERDIIHQQVESEPCSSIQQISNDMPNTSLPIDNGVQFKEYSKETSAAHEESAQSFRNIDLNANLNENEDKNASAAVEAPLPEPADMDIKHEEIPGWSLLNADKMAIDTMQLATLGSRLEEDDEDYDEEG* 287
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2587 286 MobiDBLite consensus disorder prediction 91 137 - -
Vra5g2587 286 Pfam Histone-like transcription factor (CBF/NF-Y) and archaeal histone 8 71 IPR003958 -
Vra5g2587 286 SUPERFAMILY Histone-fold 4 98 IPR009072 GO:0046982
Vra5g2587 286 PANTHER HISTONE-LIKE TRANSCRIPTION FACTOR CCAAT-RELATED 1 285 - -
Vra5g2587 286 MobiDBLite consensus disorder prediction 166 185 - -
Vra5g2587 286 Gene3D Histone, subunit A 1 86 IPR009072 GO:0046982
Vra5g2587 286 MobiDBLite consensus disorder prediction 91 154 - -
Vra5g2587 286 PANTHER HISTONE SUPERFAMILY PROTEIN 1 285 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2587 Vra-Chr5 32683694 32689107 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2587 1 275 CCAAT-HAP5 Transcription Factor Family AT3G12480 50.871 2.91e-78 238
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YC Vra5g2587 CBFD_NFYB_HMF 1.3e-19 CL0012
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2587 K21752 - gmx:100810093 435.647
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2587 5 32683694 32689107 Vra5g2587 5 32683694 32689107 ECH