Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2586 ATGCTGTCAGGGGCAAGGTCGCAGTGGGATTCCTCCCACGCCATCATCCATCGCACCTCTTCTTCATCTAATGCATACGATGTATTTGTCAGCTTCCGTGGTGAAGACACGCGCAACAACTTCACTAGTTTTCTCTTTGGAGCTCTCCGTCGACAAGGCATTCTTGCCTTCAAAGATGACCAATGTATCAAAAAAGGCGATTTCATAGCACCCGAGCTTCTACAAGCCATTCAGGGCTCTCAAGTTTTCGTTGTTGTCTTATCAAAGAACTATGCTTCCTCCACTTGGTGCTTGCGTGAACTGGTAGAGATATTTAATTGTTGTCAAACTTCAGCAAGACCTGTTATACCTATATTTTATGATGTTGAGCCTACCACGGTGCGCAACCAGAAAGGATGTTATGAGAAAGCATTTGCAGAACACGAAAATAGATTCAGAGAAGATAAGGTGAAGATGGAAGAAGTTCAAAGATGGAAAGAAGCTCTCAGAAAAGTGGCCGATATCTCTGGTTCGGAAATCGGAAATAAGCCACAAAATGAACAAATTGAAAAAATTGTTCAAGAGATAATATATAATTTGAGACCAAAAATTTTAAATCTTCCAAGGGATGAACTAGTTGGGATAGAGGATCGAGTTCAAAACTTAGGAAATATTTTGCGTTTCGACCTCCTTAATGATGTTCGAGTTGTCGGAATAAGTGGGATGGGTGGCATAGGAAAAACAACTCTTGCTCGGGCTTTATACGAAAGAATTTGTCATCAATATAATTATCGTTGTTTTATTGATGATGTAAGCAAAATATTTCTTGATTCTCGTTCGTTGGGCTTACAAAAGCAATTAATTTCTCAGACTCTAAATGAGAAAAATGTAGAGATTTGTAATGTTATCGAGGGAACATGTTTGGTGCAGTCCAAACTAAACAATGCTAAGGCACTTATAGTTTTTGACAACGTTGATGAAGTTCAACAACTAAGGATATTTAGCGGAAATAGAGACAATTTGTTGCGAGAATGCTTAGGTAAAGGGAGCAGAATCATCATAGTTTCTAGGGATGAACAAATATTGAAGATACATGGAGTGGATGATATTTATCAAGTTCGACCGTTGATATGGAAAGATGCTATCCAACTATTTTGTAGAAATGCTTTCAAAGTTAATTACATTTTGAGCGATTATGAAAAGTTGGCACATGAGATACTATCACATGTTGAAGGTCATCCCTTGGCAATTGAAACAATTGGGTCATCTTTGTTTGGCCGAAGTTTGTCACAATGGAAAAGTGTATTGAAAGGGCTAGAAGAAAATAATAAAAGTAAAAATATTATGGATATTTTGCGCATAAGTTATATTCAACTGGAAGAAAAATACAAACAAACATTTTTGGATATTGCTTGCTTCTTCAATTATTTTCACGAAGAACGTCTGAAGGAAATTCTAAATTTCCGTGGATTTCATCCTGAAGATAGCATACAAGTTCTCATTGATAAATCACTCATTACTAGAGATTTCGATGAGAGAATACATATGCATAGCTTGCTAGTGGATATGGGAAGGTGTATTGTTCGAGAAGTATCACCTAAAGAGCCTATAAAGTGGAGTAGGTTGTGGACACGCAAAGATCTCCGTGATGCTATGTCAGAGAACGAGGCAACTCGAAACCTTGAGGCAATAGTTCTTAGATATCACCTGGATGAGGTTGGTGTTAAAATCCCAGATGAAACAATCAAGGCGGATGGTCTATCAAAAATTAAACACCTGAAATTGCTTGATGTTCGGAACGTGAAGTTTTCGGGAAGTCTGAGTCATCTTTCGAATGAAATAGGATATCTTGTTTGGTACAAATATCCGTTTGAGTGTTTGCCTCAAAGTTTTCAGCCACACAAACTAGTTGAGTTAAACCTGTATGGGAGCAGTATTCAACGACTGTGGGAAGGCACAAAGCCTTTATCCAATTTGAAGCATTTGGATCTCTCTCTTTGCAAAAGTTTAGTTGAGATGCCAGATGTAACAGAGGCCCTAAATCTTGAATCGATAAATCTTGAAGGATGTGGACAGCTCCAAAATCTCAATCCATCGATTGGGAGTCTGAGAAAGCTTGTTGTTTTGAAGTTGAGAGACTGCAAAAAACTAGTAATCTTATCCAATACTATATTGGGCCTAAATTCTCTTAAATATTTGGATGTCTACGGTTGTTCAAAAATAGGTAGTAATTGCTTACTAGATGAAACAGGGAACACAGAGCACATGATCAGCTGTTTGTCGCCCTCCTCTCCTCTCTCTTGTTTGTGTGAACTCGATCTAAGCTTCTGTAACGTAGTTCAAATTCCTGATTATATTGGAAAGTTAAGTTGCTTAGAGAAGCTAAATTTAAAGGGAAACAATTTTGTTAAATTGCCTAACCTCAAGGACCTTTTGAGACTGTATTTTTTAGATTTACGGAATTGCAAGCGATTGAAATACTTGCCTGATCTCCCTTCACAAACAGTCTTGCCCTCAAAACCTTTAATGTTGTCGAGATTCCCATCTTCAATGTTTCATGATCTCCCATACTATATGGATTTTAGACTTAGAGGATTAATTATTTTCGGCTGTCCAGAATTAGTTGAGATTGAAGAGTGCACTACAAAGAGTATTTTATGGACAATTCAAATTATTGAGGCGGCCTATCAATTGTCATTCCCTAGAACTTATATCCCTGAAAGTATTATGCCTGGAAGTCAAATACCGAGCTTGTTCAACAATGAGTTTGTGAACGTGGACATACAATACCCGGACAATAATTTCATAACCATTTATCCACCTCCCGTTCCGCATGACAATAATTTCATTGGTGTTTTGTGTTGCGTAATATTTCGTCTACACAATAAACATATTCCAATGGATTTTAGAACAGATCACATGTGCTTACATTATAAAGATGTTTCTATGGACGGACGTGATATTCATCCTTATCCTTTCAGATTGAGGTCGATTAACGCATTGTTGGATGACAGGGATTTTGCTGCAGTGGATGTGAAGAAATTTCAGTATCGCTGGGTAAATGAACAAGACCTAATTAACTTCAAAATAACCCATTGTGCAAATTTGACAGCTCGGAAGATTTCCGTAATTGAGGAAAACGGTTAG 3126 0.3762 MLSGARSQWDSSHAIIHRTSSSSNAYDVFVSFRGEDTRNNFTSFLFGALRRQGILAFKDDQCIKKGDFIAPELLQAIQGSQVFVVVLSKNYASSTWCLRELVEIFNCCQTSARPVIPIFYDVEPTTVRNQKGCYEKAFAEHENRFREDKVKMEEVQRWKEALRKVADISGSEIGNKPQNEQIEKIVQEIIYNLRPKILNLPRDELVGIEDRVQNLGNILRFDLLNDVRVVGISGMGGIGKTTLARALYERICHQYNYRCFIDDVSKIFLDSRSLGLQKQLISQTLNEKNVEICNVIEGTCLVQSKLNNAKALIVFDNVDEVQQLRIFSGNRDNLLRECLGKGSRIIIVSRDEQILKIHGVDDIYQVRPLIWKDAIQLFCRNAFKVNYILSDYEKLAHEILSHVEGHPLAIETIGSSLFGRSLSQWKSVLKGLEENNKSKNIMDILRISYIQLEEKYKQTFLDIACFFNYFHEERLKEILNFRGFHPEDSIQVLIDKSLITRDFDERIHMHSLLVDMGRCIVREVSPKEPIKWSRLWTRKDLRDAMSENEATRNLEAIVLRYHLDEVGVKIPDETIKADGLSKIKHLKLLDVRNVKFSGSLSHLSNEIGYLVWYKYPFECLPQSFQPHKLVELNLYGSSIQRLWEGTKPLSNLKHLDLSLCKSLVEMPDVTEALNLESINLEGCGQLQNLNPSIGSLRKLVVLKLRDCKKLVILSNTILGLNSLKYLDVYGCSKIGSNCLLDETGNTEHMISCLSPSSPLSCLCELDLSFCNVVQIPDYIGKLSCLEKLNLKGNNFVKLPNLKDLLRLYFLDLRNCKRLKYLPDLPSQTVLPSKPLMLSRFPSSMFHDLPYYMDFRLRGLIIFGCPELVEIEECTTKSILWTIQIIEAAYQLSFPRTYIPESIMPGSQIPSLFNNEFVNVDIQYPDNNFITIYPPPVPHDNNFIGVLCCVIFRLHNKHIPMDFRTDHMCLHYKDVSMDGRDIHPYPFRLRSINALLDDRDFAAVDVKKFQYRWVNEQDLINFKITHCANLTARKISVIEENG* 1042
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2586 1041 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 189 463 IPR027417 -
Vra5g2586 1041 Gene3D - 23 194 IPR035897 -
Vra5g2586 1041 Gene3D Ribonuclease Inhibitor 743 888 IPR032675 -
Vra5g2586 1041 SUPERFAMILY L domain-like 577 922 - -
Vra5g2586 1041 Pfam NB-ARC domain 225 449 IPR002182 GO:0043531
Vra5g2586 1041 Gene3D Ribonuclease Inhibitor 552 742 IPR032675 -
Vra5g2586 1041 ProSiteProfiles Leucine-rich repeat profile. 784 805 IPR001611 GO:0005515
Vra5g2586 1041 PRINTS Disease resistance protein signature 229 244 - -
Vra5g2586 1041 PRINTS Disease resistance protein signature 305 319 - -
Vra5g2586 1041 PRINTS Disease resistance protein signature 403 417 - -
Vra5g2586 1041 PRINTS Disease resistance protein signature 647 663 - -
Vra5g2586 1041 SUPERFAMILY "Winged helix" DNA-binding domain 440 542 IPR036390 -
Vra5g2586 1041 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 23 811 IPR044974 GO:0006952
Vra5g2586 1041 Pfam TIR domain 25 192 IPR000157 GO:0007165
Vra5g2586 1041 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 23 811 - -
Vra5g2586 1041 Gene3D - 195 362 IPR027417 -
Vra5g2586 1041 ProSiteProfiles TIR domain profile. 24 193 IPR000157 GO:0007165
Vra5g2586 1041 SMART till_3 25 168 IPR000157 GO:0007165
Vra5g2586 1041 SUPERFAMILY Toll/Interleukin receptor TIR domain 17 170 IPR035897 -
Vra5g2586 1041 Pfam Leucine Rich Repeat 628 647 IPR011713 -
Vra5g2586 1041 Gene3D - 369 453 IPR042197 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2586 Vra-Chr5 32678550 32682955 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2586 21 823 WRKY Transcription Factor Family AT4G12020 28.502 2.77e-72 261
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2586 - - vra:106760531 1551.95