Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2581 ATGGGTTCTGCAAGTAACTCCAATCCAAATCCATATCCATGGACTCCAAAGGATTGTTCTGAAGGAATCTGCAGCATCTACTGCCCCCAGTGGTGTTACATAGTCTACTCTCCTCCTCCTCCTTCTCTCTTCTTTGGTGCTGATTCTGATGCTGATGATCCTTCAGGATTTGAGTTTTCTCCTCTCATAGTTGCTGTTATTGGAATATTAGCCAGCACTTTCATCTTGGTCACATACTACACCATCATCTCAAGGTTCTGCAGACGCAGCAGCACCATGCAATCAAATGATTCTGCACCAGAAGAAGATGGGAGCAGTGAACTGGGTCAGGTTTCTTCTTCCTCAAATTCTGGTTTGGATGAGGCTCTCATCAAATCCATCAAAGTCTGCAAGTACACAAAAGGGGTGGTGGAGGCTCATGATTGTTCAGTTTGTTTGAGTGAGTTTGAAGAGAATGAGAGTTTGAGATTGTTGCCAAAATGCAACCATGCTTTTCATCTCCCTTGCATTGATCCTTGGCTCAAATCTCATGCCACTTGCCCCTTGTGCCGTTCCACCATCACCATTGTTTGCCCAAATCCTGCCATGGAACCACCACCAACACTCACTGTTAATGCCTTGGAATACCAGCATAGAAGTAGCCATGTTCTTGTTGTGGTTGTTCAGAGCTCTGAGCAGCAGCATAAGGTGCTAAGTTTTGATTCTCACACTTTCAATGAGACTGAAGGGTAG 732 0.4495 MGSASNSNPNPYPWTPKDCSEGICSIYCPQWCYIVYSPPPPSLFFGADSDADDPSGFEFSPLIVAVIGILASTFILVTYYTIISRFCRRSSTMQSNDSAPEEDGSSELGQVSSSSNSGLDEALIKSIKVCKYTKGVVEAHDCSVCLSEFEENESLRLLPKCNHAFHLPCIDPWLKSHATCPLCRSTITIVCPNPAMEPPPTLTVNALEYQHRSSHVLVVVVQSSEQQHKVLSFDSHTFNETEG* 244
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2581 243 ProSiteProfiles Zinc finger RING-type profile. 142 184 IPR001841 -
Vra5g2581 243 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 14 238 IPR044675 -
Vra5g2581 243 MobiDBLite consensus disorder prediction 93 116 - -
Vra5g2581 243 SMART ring_2 142 183 IPR001841 -
Vra5g2581 243 SUPERFAMILY RING/U-box 130 193 - -
Vra5g2581 243 Pfam Ring finger domain 141 184 IPR001841 -
Vra5g2581 243 CDD RING-H2_PA-TM-RING 141 184 - -
Vra5g2581 243 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 105 189 IPR013083 -
Vra5g2581 243 PANTHER RING-H2 FINGER PROTEIN ATL53-RELATED 14 238 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2581 Vra-Chr5 32627924 32629196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2581 4 187 C3H Transcription Factor Family AT3G03550 52.174 1.58e-61 195
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2581 - - gmx:102660020 363.999