Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2580 ATGCCTCCCAAGAAGAAGAAACTCAATCCTCAGCAACCTTCCAAGTTCGGCATCCAGCACTTCTTCGATCGCGCCTCTCAGAAACACCACCACCTTCAACCCCACACCGCCACCACCACCGCCGCCACCGACACCAGCACTGCCGCCACCGCCACCTCTACCAGCACTGCCGCCACCACCACATCTATCAGCACTGCCGCCACCTCCACCAGCACTGCTGTTGCCACCTCCACCAGCACTCCTGTCGCCACCTCCACCAGCACCGCTGTAGCCACCTCCACCACCACCTCCACCATCAATTCGCCACAACAACCCGACGAAGTGTCTTCGCAGTCGCGTTTCAACTTCTCCCCTGGAATGTTAGTGAAGCAGAGCCAGGATGACGCCGTCAACGAGGTCACCTGGAAAATATCTCCCGTGAATGAGAGGCTTCTCGCTGTTTCCAAACACACGCCTGAAGTGATCAAAGCGTTGGCTGCCTCTTCCAAAATGAACTTGTCGGCAATTCGCAATGACAGTGGCGAGGAGACTTGTCTGGATAAGGTTGCTTCGCCAACTCCCAAGGTGCCGTTGAGCTTCAAAAGGATAAACTCGGCCCTTGATGTGATCGGACAGAGCCCCTTCAGAACTCCACCGTCTCTGTCTTATCGGCCTGACAAGGTGCAGCGGAGCAAGGATATTGAACACAAGAGACTGTGCGACCAGCCTTTGCTAAGACAGAACAAAAAGGCCTTGCTTGAACTCCTAGATCAAGTTGAAGATGCCATTGCTATTGATGATGCTCCAGTTTTCAATAGTAACACTTATTCCTTTAAAGTACCTCAAAATCAAGCTTACGAGCTCCCTGTCAAAGTCAGACCTGTAGTAGAAAGAACCGAATCATATTTACCTAAAGATGGTGTTGATGTCTTCTCCAATTCTAATTATTTGGTTTTGGAGGTATCTGAACTTAGGTCTGCTGATTCATCTGCTGCTCAATGCTCATCATACAAGGTGCTACGTTTGCTAAATGAACAAACTGGGGAAGAGCGAGCTGTAAACCTACGGAATGAGTGGTCTTGTTGTGTAATTTCACCTGGAGATACTGTGCATGTAATAGGACAATTTGATGAAGGGGGTAATTGTGATATTGATCGTGATAAAAACTTTTTGATTGTACACCCAGATATTCTAATGTCTGGAACGCGGGTTGCTTCCAGTTTTAGCTGCCAAAGGAGAACTGTCTTAGACGAGAGGCTGAAAAACAATGATTACTCAACTGCAGCATTAGCTGGAACAATGCTGCACCAAATTTTCCAGGCTGGGCTAACAAAAGACCATCCTACAGTAAATTTCATGGAAGATTATGCGGAAATGGTATTAAAGAAAAACATTGAAAGTTTGTATGCATGTGGAGTAAATGAGAATGACATTCGCAAAACCATGAGAGATGCTATTCCTAGATTACTAAGTTGGATCATGCGGTTTAAAAATATGGAGGAAAGAAAAGAGCCGAATGTCAAATTTGGATTTGATAATGGACCAAAGAATGTTGGCATATCTGAGGTAATTGATATTGAAGAGATGGTGTGGGCTCCAAAATATGGATTAAAAGGGATGATTGATGCTTCAGTCAGAGTGAAAATTCAATCACAAAGGGATGAACAAGAGGAAAAAATCATGCCAGTAGAGTTCAAGACTGGAAAAACACCAAATAGCCAGTCATCAGTTGAGCACAGTGCCCAAGTAATTTTGTACACTCTCTTGATGTCTGAAAGGTATCAGACAACTGTTGATTCTGGTCTTCTATATTATCTCCAATCTGATCAAACACAGGGCATCGTGGTTCAAAGATCTGACCTAACTGGGTTAATAATGCAACGAAATGAACTAGCAAGTTATATTCTTAAGGCGTTGACTCTGCAACAACTACCTCCAATGTTACAGAGCCCTAGCATTTGCAGAGGTTGTCGCCATCTTAATGTTTGTAGCATTTATCACAAGGCAAATGGTGGAAGCACAGAAATCAGTGGGTTGGGAGAAATTTTTTATTCTCTAACTAATCACATGACTTCTTCGCATTCTAAGTTTCTCCGCCAATGGGATCGATTGATTGACTTAGAAGCTAAAGAGTCTGAGATTTTAAGGAAAGAGGTGTGGCAATCACAGAGTTCAAAGAGTTCAAACAGGAGTGGTCTTTCTTCTATTGTTCTTGACTCACTAGGAATACCTCTTGAGAAATCCCTAAAAGATAATCAATTCACTTATCGTTTCATACAACAAGATTCTTCTTCTAACCTCTCTGAAGTTTCCAATGTGTCTTCTAGTGTCTCATTGGAAAATGATTTAGATTCCACACTTCGAAGTGGAGATCATGTGATACTGCGTAATCAATCTAGCCATCAAATTATTGCTAAAGGGGTGATATCTGATATTAGTCCAAATCATGTATCTGTTTCCTTTTCAAAGCGATTACGAATCCCCAGGAGTTCTTCCACTGTAAATGATCTCATTCAGCAGGTTTGGAGAATTGACAAGGATGAAGCTGTGACTTCCTTTGCAACTATGAGGTTTAATCTTGTACAACTTTTTCTACAAAATGATCGAAGTGCTCATTTGCGGCGAATGATTGTTGACCTTGAGGCTCCTAGATTTGACAGTGGATCTATACTTAGCCAGGATCCTGCAATATCCTATGTTTGCTCTGAGAAGAGTTTGAATTATGACCAACGTAGAGCAATTCTCAAGATACTTACAGCAAAAGATTATGCACTTATATTAGGGATGCCTGGAACAGGGAAAACTTCCACATTGGTCCATGCCGTGAAAGCCTTGTTGATTAGAGGAACATCCATTTTGCTAACCGCCTATACAAATTCTGCTGTTGATAATTTACTCATCAAATTAAAAGCACAGGGGATTGATTTTGTACGAATTGGAAGACAAGAAGTAGTGAATGAGGTGGTCAGAGAACACTGCCTCTCAGCAATGAGTGTACAAGGTGTTGAAGATATCAAAAGAAGGTTGGAACAAGTCAAAGTTGTTGCAGTTACTTGTCTTGGCATTTCTAGTCCCTTGCTTGCCAACAAAAGGTTTGATGTATGCATTATGGATGAAGCTGGACAGACAACCTTACCAGTGTCCTTGGGTCCTCTGACATTTGCTTCGGCGTTTGTACTTGTTGGGGATCATTATCAACTGCCACCACTTGTCAATAGTACAGAAGCCCGAGAGAATGGCATGGGGATAAGTTTGTTCTGTAGGCTCTCAGAAGCACATCCACAGGCTATTTTAGCCTTACAGAGTCAGTATCGTATGTGTCAAGACATTATGGACCTTTCAAATGCCTTGATATATGGTGACAGATTGAGGTGTGGTTCAGTGGAGGTAGCTAATGCAAAACTTGAGTTTTCAGACTTAAGCTGTGACTTGCCTTGGCTAGAACATGTTTTGAATCCTCGAAGACCTGTGATATTTATTGATACTGACAAGTTGCCGGCTTTAGAGGCAAGAGAACAGAAGGTTGTAAATAACCCTATTGAAGCTCAAATAATTGCTGAGATTGCAAAGGAATTAGTTAAAAATGGAATCGGAAAAGAACACATTGGCATTATTACTCCATATAATTCACAGGCAAACGTCATCCGCCACTGCACGACTTCCTTGGCGATACTGACTTCCTTGGAGATACATACCATTGACAAATACCAGGGTAGAGATAAGGACTGTATATTATTATCTTTTGTAAGGTCTACCGAAAACCCAACAAGCTGTGCTGCTTCTCTGCTTGGAGACTGGCACAGGATAAATGTGGCTCTTACTCGTGCTAAGAAAAAGTTGATCATGGTAGGGTCTCGGAGAACCCTATCAAAGGTTCCTCTACTGAAACTTCTTATAAGCAAAGTTGAGGAGCAATCTGGAATTTTAAGTTTGTCTAACAAGGATATATATCGAAAAGGTGAGCTCAAGAGATGTTCCCAACTCAGATGA 3969 0.4258 MPPKKKKLNPQQPSKFGIQHFFDRASQKHHHLQPHTATTTAATDTSTAATATSTSTAATTTSISTAATSTSTAVATSTSTPVATSTSTAVATSTTTSTINSPQQPDEVSSQSRFNFSPGMLVKQSQDDAVNEVTWKISPVNERLLAVSKHTPEVIKALAASSKMNLSAIRNDSGEETCLDKVASPTPKVPLSFKRINSALDVIGQSPFRTPPSLSYRPDKVQRSKDIEHKRLCDQPLLRQNKKALLELLDQVEDAIAIDDAPVFNSNTYSFKVPQNQAYELPVKVRPVVERTESYLPKDGVDVFSNSNYLVLEVSELRSADSSAAQCSSYKVLRLLNEQTGEERAVNLRNEWSCCVISPGDTVHVIGQFDEGGNCDIDRDKNFLIVHPDILMSGTRVASSFSCQRRTVLDERLKNNDYSTAALAGTMLHQIFQAGLTKDHPTVNFMEDYAEMVLKKNIESLYACGVNENDIRKTMRDAIPRLLSWIMRFKNMEERKEPNVKFGFDNGPKNVGISEVIDIEEMVWAPKYGLKGMIDASVRVKIQSQRDEQEEKIMPVEFKTGKTPNSQSSVEHSAQVILYTLLMSERYQTTVDSGLLYYLQSDQTQGIVVQRSDLTGLIMQRNELASYILKALTLQQLPPMLQSPSICRGCRHLNVCSIYHKANGGSTEISGLGEIFYSLTNHMTSSHSKFLRQWDRLIDLEAKESEILRKEVWQSQSSKSSNRSGLSSIVLDSLGIPLEKSLKDNQFTYRFIQQDSSSNLSEVSNVSSSVSLENDLDSTLRSGDHVILRNQSSHQIIAKGVISDISPNHVSVSFSKRLRIPRSSSTVNDLIQQVWRIDKDEAVTSFATMRFNLVQLFLQNDRSAHLRRMIVDLEAPRFDSGSILSQDPAISYVCSEKSLNYDQRRAILKILTAKDYALILGMPGTGKTSTLVHAVKALLIRGTSILLTAYTNSAVDNLLIKLKAQGIDFVRIGRQEVVNEVVREHCLSAMSVQGVEDIKRRLEQVKVVAVTCLGISSPLLANKRFDVCIMDEAGQTTLPVSLGPLTFASAFVLVGDHYQLPPLVNSTEARENGMGISLFCRLSEAHPQAILALQSQYRMCQDIMDLSNALIYGDRLRCGSVEVANAKLEFSDLSCDLPWLEHVLNPRRPVIFIDTDKLPALEAREQKVVNNPIEAQIIAEIAKELVKNGIGKEHIGIITPYNSQANVIRHCTTSLAILTSLEIHTIDKYQGRDKDCILLSFVRSTENPTSCAASLLGDWHRINVALTRAKKKLIMVGSRRTLSKVPLLKLLISKVEEQSGILSLSNKDIYRKGELKRCSQLR* 1323
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2580 1322 CDD SF1_C_Upf1 1099 1296 IPR041679 -
Vra5g2580 1322 Pfam AAA domain 899 990 IPR041677 GO:0004386
Vra5g2580 1322 Pfam AAA domain 999 1066 IPR041677 GO:0004386
Vra5g2580 1322 Gene3D - 823 1096 IPR027417 -
Vra5g2580 1322 Pfam DNA replication factor Dna2 338 540 IPR014808 -
Vra5g2580 1322 MobiDBLite consensus disorder prediction 26 113 - -
Vra5g2580 1322 CDD DEXXQc_DNA2 898 1098 - -
Vra5g2580 1322 PANTHER DNA2/NAM7 HELICASE FAMILY 179 1297 IPR045055 -
Vra5g2580 1322 Gene3D - 1097 1313 IPR027417 -
Vra5g2580 1322 PANTHER DNA REPLICATION ATP-DEPENDENT HELICASE/NUCLEASE DNA2 179 1297 IPR026851 GO:0017108|GO:0017116|GO:0033567
Vra5g2580 1322 Pfam Domain of unknown function DUF83 548 657 IPR022765 -
Vra5g2580 1322 MobiDBLite consensus disorder prediction 32 113 - -
Vra5g2580 1322 Pfam AAA domain 1076 1279 IPR041679 -
Vra5g2580 1322 Gene3D - 393 657 IPR011604 -
Vra5g2580 1322 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 898 1287 IPR027417 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2580 Vra-Chr5 32610317 32626181 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2580 1 1040 Core DNA Replication Machinery Family AT1G08840 53.333 0.0 1050
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2580 K10742 - gmx:100799415 1959.5