Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2577 ATGGCAATTACGTTGAGTGAAGGAGCTTCTTCATCTTCTGGTTTTGACCGTGGATGGACTTATGATGTGTTCTTGAGTTTCAGAGGTGAAGATACAAGGAGAAGCTTTACAGGGTTTCTGTATCATGGTTTGTGCCAAAGGGGTATCAATGTTTTCATTGATGATGACAAGCTCAGGAAAGGTGAAGACTTATCCCCTACTCTTCTTGGAGCCATTCAAGAGTCTAGAATTGCCATCATTGTCTTCTCTCAAAACTATGCATTCTCCACATGGTGTCTTGATGAACTTGCAAAGATCATTGACTGTTACAAAACAAGAGGGCAACTTGTGTGGCCAGTTTTCTTCCATGTCGACCCTTCTGTGGTGCGCCATCAGAGAGGAACTTTTCAAACAGCAATGGCCCAACATGAAGTCAGATTCAAGGGTAATGTTGAAAAGTTGCAGAAGTGGAAGAAAGCCTTGTTTGAAGCATCCAATTTCTCAGGTTGGAACTTAGAAAACGGGTATGAATTTCAGATAATCCAAGATATTGTTGAGGAGGCCTCTAGAAAGTTAAGCCACACCATTTTGCACATTGCTGAATACCCAGTTGGAATAGAGATTCGCATATCTGAAGTGATGCCTCTTTTGCAGATTGAACCGGGTGAAGATATTCGTGTCATTGGGATCTATGGACTTGGAGGCATAGGTAAGACAACAATTGCAAGGGCATTGTACAACATGATTGCAGACCAGTTTGAAGCTACAAGTTTCCTTTCTGACATAAGAGAAAGTTCAAATCAAAGACAAGGGCTAGTGCAGCTTCAAGAATCACTTCTTTTTGATACTGTTGGGGACAAGAACATCAAGCTGGGAAGCATTTACAAAGGAATCCCTATTATCAAGAAAAGGCTTTGTTGCAAAAAAGTACTTTTGATCATTGATGATGTTGACAGGTTGGAGCAGCTTCAAGCCCTGGCAGGAGGACGCGATTGGTTTGGTTTTGGAAGTGTGATCATCATAACAACAAGAGATAAGCATTTGCTGAGTGCTCATCAGGTTGACAAAACCTATGAGGTAAAGAAATTAAACTATGGTGAAGCTTTTGAACTGTTCACTTGGAGTGCTTTCAAAAGGAAGGCACCTGATGCAGGCTATTTGGAGGTTTCTAACCGTGTTGTTCTCTATGCTGAGGGCCTTCCATTGGCTTTGAAAATAATGGGGTCTAATTTGTTTGGTAAAACAGTGGAGGAATGGAAGTCTGCGTTGGGAAAATATGAGAAGATTCCTAACAAAGAGGTTCAGAATGTGCTAAGAGTAACCTATGATAATCTAGAAGAGAATGAGAAGGAAATTTTCCTTGATGTGGCATGCTTCTTCAAGGGAGAGACAGTGGAATATGTAGAAAACACACTGCAAGGCTGTGGTTTTTATCCAACAATTGGTATCAGTGTACTTATTGATAGATCTCTTGTTAGTATTGATGAATATAACAGATTGAGAATGCATGATTTAATTCAAGACATGGGCAGGGAAATAGTTAGAGAAGTTTCACCATTAGAACCTGGAAAAAGGAGTAGATTGTGGTATCATGAAGATGTTTTTGAAGTTCTCACTGAAAATAAGGGGACTTATAGAATTCAGGGCATGATGGTTGACCTCCCTGATGACTACATGGTACACTTGAAAGATGATTCCTTCAAGAAGATGAAAAATCTTAAAATTCTCATAGTTAGAAATGGAAACTTTTTTGGAAGCCCCCAACATCTTCCAAACAGCTTAAGGTTGCTTGATTGGATGAAATATCCTTCGTCTTTGCCATCTAGTTTTCAACCAAAGAAACTTGTTGTACTCAACTTGTCAGGCAGTCGTTTCACAATGCAAGAGCCATTTAAGTATTTGGATTCCTTGACTTCTATGGACTTGAGTTCCTGTGAATTGTTGACAAAACTACCTGAAATTGCAGGAGTCCCTAATCTAACACAGCTAACTCTTGACTATTGTACAAATTTAGAAGAAGTTCATGAATCTGTTGGATTCCTTGAGAAACTTGTTGAGTTTAGGGCTTATGGATGCACCAAGCTTAAGGTTTTTCCAAATGCTATCAGGTTGACATCATTGAGAAGTCTTATCCTTAATTGGTGTTCAAGCCTTCAAAATTTTCCAGCTATTTTGGGGAAAATGGATAACCTCATTTCCATTTCTATAGAAGGCACTGGTATAAAAGAATTGCCTCCTTCCATTGGAAACCTTGTTAGTCTTCAAGAGTTAAGCATGACATCTTGCTTAAACCTCAAGGAACTGCCTCACAATTTTGATATGCTTCAAAGTCTTACAAACCTTGATATGGAGGGCTGTCCACATCTCCGAAACTTTCTGACAAAGTTGGCAAACATGGGAGAATCTACACATACCTTTGGCAACATTCTGTCACTGAATGTAGAAAACTGTGGCCTTATAGATGAAGATCTTCCCATAATTTTCAATAATTTCCCAAATTTAGCATCAGTAGTACTCTCGGGAAATCATTTTAAAGCTCTTCCAAGCTGCATACAACAATGTCCTTGCTTGGAACTACTTCACTTGGACAACTGTAAAAACATCCAAGAAATTTCAGCATTTCCTCCTAACATGCAGTACATTAATGCACAAAATTGTATATCATTGTCTGAAGAGTCATCCAATTTATTATTTAACAAGGTTTGCATCTTTTTTAAGTCTTCTATGCTTTCTTTAGTCACCACCCATTTTCACTTGAACTTTCTTGTGCAGGAAACTTTTGAGGGATGGGAATTACAGGCTATGGTGCCTGGAACAATGGTTCCAGAGTGGTTTGACCACATCACCAAAGGAGAATACATGACATTTTGGGTACGCGAAAGGTTTCCAGCTATTATCATATGTTTTGTTCTTGAGGTTGAGAGTGAAATGAAGAAAATTTTCAATTGTGAAATCCGCTTTTATATAAATGGTGAAGAAGTTTATGAATTGCAAATTCCAAGAGGCTTTTCAGATATGGTGACAGATCATGTGTGGCTCTATGACTTGAGAACTCATTCATCTATCAACTGGCGCAGTCTTGATTTGTATCTGATGGATGGCTGGAATCAGGTTGAGATTTCATGTGAGAAGATAAGTGGAGCATCAAATCTGACTGTGAGTTGGTGTGGAGTTCATGTGGTTAAGCAAGAAGCTAACATGAAGGATATACTACTTACAGATCCTGATCCAGATTTAGATTCAGTTATAGCTTCTGGATCAAACACACTAGTTTCTGATCATCCAGTGAAAGCTCAACCACAATCCCAAGTCACAAGCTTCACACTACAGACACCTCAAAATAATAACAGTTCCACAATTGTGCTGCCAACAACAGTTCAAACCAGTTTGACTGTAAATGATGCAGACATGGAAGCATTTTATGCTGTTCTGGATGATGAGATCTCTGTGGTGTCACTTAACAATGATTCAACAATGGTTTCTAAATTGACCAACCAAAGGCCAAGTGAAGAGACAAAGAAAGCATTGAAGACACTTCAAGCCCATGTCACTAAAGAATTTTCTGCTCTGCTGGGCCCTAATGAATACAGTACAGTGAATGATACCTTAGAGTACCTCACAAATTTGCCAGCAGAAGATGAAATATCAGTGGAAATAAGATCTCTAATAATACAAGTTTCAAGACAGTTCACTCGTTGGAGTAGGGATTACACATCTGAGAACAAGAAAATAGAGTCTACCACAGCCAAGTTGTTGAAAGCTGATGAACTAGAAAAGTGTCTTGAAGCTAATAAGACTAACTTCAAGCAAGTGATGTGCATGGAAAATGAGTTGTGCAATGATTTGGCCCATTTGGAACAAAGAAAGAGAGAGCTAGAAGAGCAGATAAATGCTGTTAAAGCTAACATCTCTGCTTCAGAAGCAGCTAAGAACATGGCTAGTGAAATAAAAAGAGAACTCTTTGGAAAAGCAAAGATTTTGAAAGCTGAAAGAGATGAGTTGAGGGAACAAGTGCCACACTTGAGAGATGAACAGGAATTGGCCAAGAAAATTCAGTCAAATATCAGAGATGAATGGTCAAAGCTTGGTGAAAAATTTAACTATGGATTAAGGCATGGAAAAATTGATTAG 4110 0.3881 MAITLSEGASSSSGFDRGWTYDVFLSFRGEDTRRSFTGFLYHGLCQRGINVFIDDDKLRKGEDLSPTLLGAIQESRIAIIVFSQNYAFSTWCLDELAKIIDCYKTRGQLVWPVFFHVDPSVVRHQRGTFQTAMAQHEVRFKGNVEKLQKWKKALFEASNFSGWNLENGYEFQIIQDIVEEASRKLSHTILHIAEYPVGIEIRISEVMPLLQIEPGEDIRVIGIYGLGGIGKTTIARALYNMIADQFEATSFLSDIRESSNQRQGLVQLQESLLFDTVGDKNIKLGSIYKGIPIIKKRLCCKKVLLIIDDVDRLEQLQALAGGRDWFGFGSVIIITTRDKHLLSAHQVDKTYEVKKLNYGEAFELFTWSAFKRKAPDAGYLEVSNRVVLYAEGLPLALKIMGSNLFGKTVEEWKSALGKYEKIPNKEVQNVLRVTYDNLEENEKEIFLDVACFFKGETVEYVENTLQGCGFYPTIGISVLIDRSLVSIDEYNRLRMHDLIQDMGREIVREVSPLEPGKRSRLWYHEDVFEVLTENKGTYRIQGMMVDLPDDYMVHLKDDSFKKMKNLKILIVRNGNFFGSPQHLPNSLRLLDWMKYPSSLPSSFQPKKLVVLNLSGSRFTMQEPFKYLDSLTSMDLSSCELLTKLPEIAGVPNLTQLTLDYCTNLEEVHESVGFLEKLVEFRAYGCTKLKVFPNAIRLTSLRSLILNWCSSLQNFPAILGKMDNLISISIEGTGIKELPPSIGNLVSLQELSMTSCLNLKELPHNFDMLQSLTNLDMEGCPHLRNFLTKLANMGESTHTFGNILSLNVENCGLIDEDLPIIFNNFPNLASVVLSGNHFKALPSCIQQCPCLELLHLDNCKNIQEISAFPPNMQYINAQNCISLSEESSNLLFNKVCIFFKSSMLSLVTTHFHLNFLVQETFEGWELQAMVPGTMVPEWFDHITKGEYMTFWVRERFPAIIICFVLEVESEMKKIFNCEIRFYINGEEVYELQIPRGFSDMVTDHVWLYDLRTHSSINWRSLDLYLMDGWNQVEISCEKISGASNLTVSWCGVHVVKQEANMKDILLTDPDPDLDSVIASGSNTLVSDHPVKAQPQSQVTSFTLQTPQNNNSSTIVLPTTVQTSLTVNDADMEAFYAVLDDEISVVSLNNDSTMVSKLTNQRPSEETKKALKTLQAHVTKEFSALLGPNEYSTVNDTLEYLTNLPAEDEISVEIRSLIIQVSRQFTRWSRDYTSENKKIESTTAKLLKADELEKCLEANKTNFKQVMCMENELCNDLAHLEQRKRELEEQINAVKANISASEAAKNMASEIKRELFGKAKILKAERDELREQVPHLRDEQELAKKIQSNIRDEWSKLGEKFNYGLRHGKID* 1370
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2577 1369 Gene3D - 355 439 IPR042197 -
Vra5g2577 1369 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 1101 1342 - -
Vra5g2577 1369 PANTHER RESISTANCE PROTEIN (TIR-NBS-LRR CLASS), PUTATIVE-RELATED 15 1074 - -
Vra5g2577 1369 Gene3D - 187 351 IPR027417 -
Vra5g2577 1369 SUPERFAMILY "Winged helix" DNA-binding domain 426 531 IPR036390 -
Vra5g2577 1369 Coils Coil 1268 1302 - -
Vra5g2577 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 1101 1342 IPR044974 GO:0006952
Vra5g2577 1369 PANTHER LEUCINE-RICH REPEAT-CONTAINING PROTEIN 15 1074 IPR044974 GO:0006952
Vra5g2577 1369 Pfam TIR domain 21 186 IPR000157 GO:0007165
Vra5g2577 1369 SMART till_3 20 160 IPR000157 GO:0007165
Vra5g2577 1369 SUPERFAMILY Toll/Interleukin receptor TIR domain 11 163 IPR035897 -
Vra5g2577 1369 ProSiteProfiles TIR domain profile. 19 185 IPR000157 GO:0007165
Vra5g2577 1369 Pfam NB-ARC domain 210 431 IPR002182 GO:0043531
Vra5g2577 1369 Gene3D Ribonuclease Inhibitor 538 712 IPR032675 -
Vra5g2577 1369 Gene3D - 18 186 IPR035897 -
Vra5g2577 1369 PRINTS Disease resistance protein signature 220 235 - -
Vra5g2577 1369 PRINTS Disease resistance protein signature 297 311 - -
Vra5g2577 1369 PRINTS Disease resistance protein signature 390 404 - -
Vra5g2577 1369 PRINTS Disease resistance protein signature 625 641 - -
Vra5g2577 1369 Gene3D Ribonuclease Inhibitor 713 896 IPR032675 -
Vra5g2577 1369 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 185 448 IPR027417 -
Vra5g2577 1369 Coils Coil 1310 1337 - -
Vra5g2577 1369 SUPERFAMILY L domain-like 515 888 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2577 Vra-Chr5 32579428 32584036 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2577 15 785 WRKY Transcription Factor Family AT4G12020 31.414 1.69e-92 328
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2577 - - gmx:100798893 1798.48