Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2573 ATGTTCGCGGCGTCTCCGCCACCCTCCGCCCCCGCTACCACTGCCGGCGTTGGTCTCGGCTACGGCATTGCCATCGCCGTCAGCATCCTCGTCCTCATCTCCTCCATCATGCTCGCCTCCTACGCCTGCGTCCGCTTCAAATCAAACTCTCCTCGCACTCGCAACAACACTTATTACGACCAAACGGAACAGAATAACAGCATTCACGACTCCGGTGGGCCCGAACCCGTCGTCCTGGGCCTGGAAAAGCCTGCCATCGAGGCCTACCCGAAGATCGTGGTCGGAGAGAGCGGCCGCCTCCCTAGGCCCAACGACAGCGGCTCCTGCGCCATCTGCCTCTGCGACTACCTTCCCAAGGACACCGTACGCTGCGTTCCGAGCTGCTACCACTGCTTTCACGCGGACTGCGTGGACGAGTGGCTGAAGATGAGTGCCACGTGTCCGCTCTGCCGGAACTCCCCGGCGCCATCACCATCGCCGTCACCGACGCCGCTCTCGGAGCTCGTTCCGCTGGCTTTCCACGCCAGTGTCATGGAGGAAGTGGGTGAACACAGTAAAGCTTCTGACACTAGGAAGAAGGTTTGGTTTTGTCATCATTTCGTTACATCAAAGTCAATGTACAGTACCCGAATCACTAAATTCCCAAGGTTGTTGAACTGGATTGGTATCAATATTGGGGAGAAGTTTATAGCAACTGCATTGGCAAAGGGATCGGTTGTTGTTGATGTTGGTGTGTCCAAAGAGGAGCTTAGTTATGGGGTGGTCAAAGACGCTGTGCAAAAACATGGTTTTCCATATTNCAAGCAAAATAGAGGAGAAATGGAGAAATTATTTTCTATTGTAGATGAACAAACAAGAGTTGTTGCCGACATGCGAACTAGTATTGACAAATTAAAGAAGTCGGTTGAGGCCAGCAATGAAGATAAGAGTGAAGATTTTGTCGAACAACCATTTTTTGGAAGTGAAGGTCATTTGCAAAGCACACCGGTTCAAGATGATCAGCAAACCCCGATGGTTGATGGTGGTATTGAAATGAAACAAACCACGATGTATGACCGGATGAAAGCTGCTCCTCGAAAACGGATTAAGAGTCTGGCAAGAAGAACTCCCTATACCGAAAATGTTACAAGAAAAAATGAGTACTTCATTAACTTGTACTAG 1161 0.5056 MFAASPPPSAPATTAGVGLGYGIAIAVSILVLISSIMLASYACVRFKSNSPRTRNNTYYDQTEQNNSIHDSGGPEPVVLGLEKPAIEAYPKIVVGESGRLPRPNDSGSCAICLCDYLPKDTVRCVPSCYHCFHADCVDEWLKMSATCPLCRNSPAPSPSPSPTPLSELVPLAFHASVMEEVGEHSKASDTRKKVWFCHHFVTSKSMYSTRITKFPRLLNWIGINIGEKFIATALAKGSVVVDVGVSKEELSYGVVKDAVQKHGFPYXKQNRGEMEKLFSIVDEQTRVVADMRTSIDKLKKSVEASNEDKSEDFVEQPFFGSEGHLQSTPVQDDQQTPMVDGGIEMKQTTMYDRMKAAPRKRIKSLARRTPYTENVTRKNEYFINLY* 387
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2573 386 ProSiteProfiles Zinc finger RING-type profile. 109 151 IPR001841 -
Vra5g2573 386 PANTHER RING-H2 FINGER PROTEIN ATL69-RELATED 20 157 - -
Vra5g2573 386 MobiDBLite consensus disorder prediction 54 71 - -
Vra5g2573 386 SUPERFAMILY RING/U-box 108 157 - -
Vra5g2573 386 MobiDBLite consensus disorder prediction 318 340 - -
Vra5g2573 386 SMART ring_2 109 150 IPR001841 -
Vra5g2573 386 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 20 157 - -
Vra5g2573 386 MobiDBLite consensus disorder prediction 321 335 - -
Vra5g2573 386 Pfam Ring finger domain 108 151 IPR001841 -
Vra5g2573 386 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 77 156 IPR013083 -
Vra5g2573 386 MobiDBLite consensus disorder prediction 54 74 - -
Vra5g2573 386 CDD RING-H2_PA-TM-RING 109 151 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2573 Vra-Chr5 32548812 32555213 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2573 7 174 C3H Transcription Factor Family AT5G07040 60.714 1.07e-59 189
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2573 - - vra:106761828 735.332
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2573 5 32548812 32555213 Vra5g2573 5 32548812 32555213 ECH