Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2571 ATGGCATCAAGCTCAATGTCTTCCACTGGCTCATGGAGTGCCAAGGACAACAAAGCCTTTGAAAGGGCTCTAGCTGTTTATGACAAAGACACTCCTGACCGCTGGTACAATGTTGCTAAGGCTGTTGGTGGAGGGAAGACCCCAGAAGAAGTCAAGAGGCACTATGAACTCCTCCTCAGGGATGTTAGGCACATTGAATCAGGACAAGTTCCCTTCCCAAATTACAAGCAAAGTGGAGGGTCTCAAGAGGAGAAAAGGTAG 261 0.4828 MASSSMSSTGSWSAKDNKAFERALAVYDKDTPDRWYNVAKAVGGGKTPEEVKRHYELLLRDVRHIESGQVPFPNYKQSGGSQEEKR* 87
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2571 86 Gene3D - 2 72 - -
Vra5g2571 86 SUPERFAMILY Homeodomain-like 10 67 IPR009057 -
Vra5g2571 86 PANTHER TRANSCRIPTION FACTOR MYB/SANT FAMILY-RELATED 1 85 - -
Vra5g2571 86 Pfam Myb-like DNA-binding domain 9 56 IPR001005 -
Vra5g2571 86 ProSiteProfiles Myb-like domain profile. 4 59 IPR001005 -
Vra5g2571 86 PANTHER MYB FAMILY TRANSCRIPTION FACTOR-RELATED 1 85 IPR044636 GO:0003700
Vra5g2571 86 CDD SANT 18 59 IPR001005 -
Vra5g2571 86 SMART sant 8 61 IPR001005 -
Vra5g2571 86 ProSiteProfiles SANT domain profile. 7 63 IPR017884 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2571 Vra-Chr5 32531899 32534767 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g2571 Myb_DNA-binding 1e-05 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2571 - - vra:106761815 176.022