Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2565 ATGAATTGCTCATCATGGGGGACTTCAGAATCCAGAAGTTTGAGCTTAAAAGTGGATTTTCTGCCACAACAATGCCACAGGAGCAAAACGTTGAGCTTTCAATTCCAAGAACAGGATTCATCTTCGATTCATTCGGGTCAATCTTCTACCAGACTTGGTTCAGCAAAATCCGGTGAAATGTCTGTTCAGCATAGTTCTACTGGTTCAACACTTCAGCATAGATCATTCATGCAGAATCAGGATTTCACCTTCCCTCCTCCACTACTGGATCACGGCCAAACACTTGCTCACTATGCTGATCCAGGCTACAGCAACCTTATGGCTTCTTCATATGGTCCACAATCTATGCCAGTGGAAACTGCTCCTATGAGAATTCCTCTGCAACTGGACGTTAAAGAAGAACCCATATATGTGAATTCAAAGCAGTACCATGCTATTCTGAGAAGAAGACTGTACCGAGCAAAACTTGAAGTACAAAACAAACCCATCAAGGATCGAAAAGTACTAAACATGTCTATGTTTTTTTGTCTACAATTTCTGCTAAACCAAACTAATAACACTGTTGCCATGCAGCCTTATCTTCACGAGTCCCGTCATCTACATGCAGTGAATAGAGCAAGAGGTGCTGGTGGACGCTTTCTCAACACTAAAAAGCTTCAACAATCAACTCGTACTCGTGGAAATACTGCAGAATCTAACATGCATCAAATAGAAAACTACAGAGATGGTGATGATACCACATATGCATCTAACACTGCTGCAAGAATTATGCAGAATTGTATATCTGATAAGGGTGGTGGCACCACTCAGCAGCAGCCTCTATTTGTCTACATGTGA 837 0.4182 MNCSSWGTSESRSLSLKVDFLPQQCHRSKTLSFQFQEQDSSSIHSGQSSTRLGSAKSGEMSVQHSSTGSTLQHRSFMQNQDFTFPPPLLDHGQTLAHYADPGYSNLMASSYGPQSMPVETAPMRIPLQLDVKEEPIYVNSKQYHAILRRRLYRAKLEVQNKPIKDRKVLNMSMFFCLQFLLNQTNNTVAMQPYLHESRHLHAVNRARGAGGRFLNTKKLQQSTRTRGNTAESNMHQIENYRDGDDTTYASNTAARIMQNCISDKGGGTTQQQPLFVYM* 279
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2565 278 Pfam CCAAT-binding transcription factor (CBF-B/NF-YA) subunit B 134 213 IPR001289 GO:0003700|GO:0006355
Vra5g2565 278 ProSiteProfiles NF-YA/HAP2 family profile. 132 216 IPR001289 GO:0003700|GO:0006355
Vra5g2565 278 SMART cbf3 131 216 IPR001289 GO:0003700|GO:0006355
Vra5g2565 278 MobiDBLite consensus disorder prediction 36 71 - -
Vra5g2565 278 ProSitePatterns NF-YA/HAP2 subunit signature. 137 157 IPR018362 GO:0003677|GO:0016602
Vra5g2565 278 Gene3D - 132 218 - -
Vra5g2565 278 PANTHER TRANSCRIPTION FACTOR NF-Y ALPHA-RELATED 30 248 IPR001289 GO:0003700|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2565 Vra-Chr5 32409563 32412928 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2565 97 247 CCAAT-HAP2 Transcription Factor Family AT1G17590 44.172 7.99e-36 129
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF NF-YA Vra5g2565 CBFB_NFYA 1.8e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2565 K08064 - gmx:100803893 326.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2565 5 32409563 32412928 Vra5g2565 5 32409563 32412928 ECH
Vra5g2565 5 32409563 32412928 Vra9g0301 9 2357076 2361756 PCT
Vra2g0429 2 3332325 3334762 Vra5g2565 5 32409563 32412928 PCT