Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2564 ATGGAAGCGCGAAGTCGCTCCGTGGAAGACATATTCGAGGATTTCAAGGGGCGAAGAGCAGGCATCATCAAAGCCCTCACCACCGATGTTGAAGATTTCTACAGCCAATGTGATCCTGAGAAGGAGAATTTGTGCTTATATGGATTACCCAGTGAGCAGTGGGAAGTAAATTTACCTGTTGAAGAAGTTCCTCCAGAGCTTCCTGAGCCTGTCCTGGGCATTAACTTTGCTAGGGATGGCATGCAGGAAAAAGACTGGCTATCTTTAGTTGCTGTTCATAGTGATACATGGTTGCTTGCCCTTGCCTTTTATTTTGGAGCCAGATTTGGATTTGATAAAACTGACAGGAAACGACTATTCAGTATGATCAACGAACTACCAACAATATTTGAAGTTGTTACTGGTGGTGGAACAAAGAAGCCAGTTAAAGAGAAGTCTTCAGTTTCGAACAACAGTGGAAACAAATCTAAGTCTAACTCTAAAGTGCGGGTTTCCGAAACCCAGGGCAGACAGTCAAAGGCATTGTTACAACCAAAAGACGAGGATGAAGGACTAGAAGAGCAAGATGAAGATGAGCATGGAGAGACCTTGTGTGGGGCATGTGGTGAGAATTATGGCACTGATGAGTTCTGGATTTGCTGTGACATCTGCGAGAAGTGGTTCCATGGCAAATGCGTGAAGATAACTCCTGCTAGGGCAGAGCACATCAAGCAATACAAGTGTCCATCGTGCAGTAACAAGAGAGCTCGCTAA 753 0.4489 MEARSRSVEDIFEDFKGRRAGIIKALTTDVEDFYSQCDPEKENLCLYGLPSEQWEVNLPVEEVPPELPEPVLGINFARDGMQEKDWLSLVAVHSDTWLLALAFYFGARFGFDKTDRKRLFSMINELPTIFEVVTGGGTKKPVKEKSSVSNNSGNKSKSNSKVRVSETQGRQSKALLQPKDEDEGLEEQDEDEHGETLCGACGENYGTDEFWICCDICEKWFHGKCVKITPARAEHIKQYKCPSCSNKRAR* 251
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2564 250 PANTHER ALFIN-LIKE TRANSCRIPTION FACTOR 1 250 - -
Vra5g2564 250 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 188 246 IPR013083 -
Vra5g2564 250 SMART PHD_3 197 245 IPR001965 -
Vra5g2564 250 ProSiteProfiles Zinc finger PHD-type profile. 195 247 IPR019787 -
Vra5g2564 250 SUPERFAMILY FYVE/PHD zinc finger 187 248 IPR011011 -
Vra5g2564 250 MobiDBLite consensus disorder prediction 138 191 - -
Vra5g2564 250 PANTHER CPG BINDING PROTEIN 1 250 IPR045104 GO:0006355|GO:0042393
Vra5g2564 250 ProSitePatterns Zinc finger PHD-type signature. 198 244 IPR019786 -
Vra5g2564 250 CDD PHD_AL_plant 197 247 IPR044104 -
Vra5g2564 250 Pfam PHD-finger 198 247 IPR019787 -
Vra5g2564 250 Pfam Alfin 7 135 IPR021998 GO:0006355|GO:0042393
Vra5g2564 250 MobiDBLite consensus disorder prediction 143 174 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2564 Vra-Chr5 32404230 32408517 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2564 6 250 Alfin-like Transcription Factor Family AT3G42790 74.286 9.92e-123 347
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF Alfin-like Vra5g2564 Alfin 3.1e-68 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2564 - - gmx:100170696 412.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0300 9 2348115 2352890 Vra5g2564 5 32404230 32408517 ECH
Vra5g2564 5 32404230 32408517 Vra5g2564 5 32404230 32408517 ECH
Vra5g2564 5 32404230 32408517 Vra9g0300 9 2348115 2352890 PCT