Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2561 ATGGGTTCAAATGCAGCAGAAGAAGAGTCTACCTTGATCGCCATTGATAGCGATCAGAACAGCCAACATGCAGTCAAATGGGCTGTGGAATATCTCTTCAAGAACAACTCTTCCTGCACCCTCCTTCACGTCAGAACTAAGAACTTATATCACAATGATTTGGAGGTTTTCCCTAAGCAAGGTCGCCCACCAACAGAAGAAGAATTGCAACAGATTTTTCTTCCCTTTCGAGGATTTTGTGCTCGAAAAAGGGTCGCAGTTAAAGAGTTAGTTCTGCAAGACACTGACGTAGCAAATGCGCTTACTAATTACATAATTCTGAACTCTATCAACAATGTTGTTGTTGGTGCTTCTCGCTCCAAAGCTCTTCTAAGGAAATTTAAAGATGTAGATGTGCCAACAAGCTTGGTAAGATCTTTGCCTCAATCTTGCATGGTGCATATCATATCAAAAAGAAAAGTGCAGAGTATTCGACCAGCAGGTCATTCTCATCAGAATATTAGTATCGCACCATCAAAATCTCTAAAAGCCATCAGGGAAAGTTTTCGGTCCAAAGATTTAAACAGAAGATCGCTCCAAATTAAATTTTGGCAAAGCTCAAACAATGATGGGGTATCTCTAATGACACCACACAAGAACAATGGAGAGACTGATTCTGCAAAACTATCTGATGAAACCAGTTCTTTACAAACTTCATCCAATCAAAGTTTCTTTAAAGAAGACACTTCAAGGTTGTTTGATAATCAAACCAGTGAGACATCACATGGAAACCAAAACGTTGTCATTAATTCGAATTGTAGGAGCAAATCTTCCAAAAAGTCTCCGACAAAGAAGCATGAAAATATTAGGCAAGAAGAGGGAGACATGCATGAAGAAGAAGAACAAGAAGAGAGGAAAAAACCATCAAATGAAATTGCACCAAACAAAGTTCTATTTAAAAGATACAACATTAAAGAAATAGAAGTAGCAACTAATTACTTTGACAATGCCCTGAAAATCGGTGAAGGTTCATATGGACCTGTTTTCAAAGGGGTGCTTGATAACATTGATGTTGCTGTCAAGGCTCTGAGACCTGACATAACTCAAGGGGAGAAGCAGTTTCAACAAGAGGTTATTGTTTTGAGCACAATAAGACATTCAAACATGGTTAAACTTTTGGGTGCATGTCCGGAGTATGGATGCCTTGTGTATGAGTACATGGAAAATGGAAGTTTAGAAGATCGTCTATTCCAAAAAGATAACACACCAGTAATTCCATGGAAAGTTAGATTCAAAATAGCATCAGAAATTGCCACAGGCCTTCTTTTCCTTCATCAGACAAAGCCTGAGCCTATTGTGCACCGAGACCTGAAACCTGCAAATATTTTGTTAGACTGTAACTATAGTAGCAAGATCACTGATGTGGGTTTGGCAAGGCTAGTTCCACCTGCCATACCGAACAAAAGCACTCAATACCATAAGACAACTGCAGCTGGTACATTTTGCTACATTGATCCAGAATATCAGCAAACAGGACTATTGGGAGTTAAATCAGACATTTATTCACTAGGTGTAGTGCTATTGCAAATTATAACTGGAAAGGCTCCTATGGGTGTGGCTCACTTAGTTCAAGAGGCTATAGAAAAAGGTACATTTTCTGAGGTTCTTGATCCTAATGTCATGGATTGGCCTGTTGAGGACACTTTGTCATTTGCTAAGTTGGCTTTGAAGTGTTGTGAGATGAGAAAACGAGATAGACCAGATCTTGCTTCTGTGATTTTGCCAGAATTGACTCGGCTTGCAAATTTAGGAGTAGCGATTACATTTCCCAAAGACAAAATCATGGTGTAA 1830 0.3918 MGSNAAEEESTLIAIDSDQNSQHAVKWAVEYLFKNNSSCTLLHVRTKNLYHNDLEVFPKQGRPPTEEELQQIFLPFRGFCARKRVAVKELVLQDTDVANALTNYIILNSINNVVVGASRSKALLRKFKDVDVPTSLVRSLPQSCMVHIISKRKVQSIRPAGHSHQNISIAPSKSLKAIRESFRSKDLNRRSLQIKFWQSSNNDGVSLMTPHKNNGETDSAKLSDETSSLQTSSNQSFFKEDTSRLFDNQTSETSHGNQNVVINSNCRSKSSKKSPTKKHENIRQEEGDMHEEEEQEERKKPSNEIAPNKVLFKRYNIKEIEVATNYFDNALKIGEGSYGPVFKGVLDNIDVAVKALRPDITQGEKQFQQEVIVLSTIRHSNMVKLLGACPEYGCLVYEYMENGSLEDRLFQKDNTPVIPWKVRFKIASEIATGLLFLHQTKPEPIVHRDLKPANILLDCNYSSKITDVGLARLVPPAIPNKSTQYHKTTAAGTFCYIDPEYQQTGLLGVKSDIYSLGVVLLQIITGKAPMGVAHLVQEAIEKGTFSEVLDPNVMDWPVEDTLSFAKLALKCCEMRKRDRPDLASVILPELTRLANLGVAITFPKDKIMV* 610
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2561 609 SMART serkin_6 327 591 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2561 609 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 10 266 - -
Vra5g2561 609 PANTHER PROTEIN KINASE SUPERFAMILY PROTEIN 283 599 - -
Vra5g2561 609 SUPERFAMILY Protein kinase-like (PK-like) 304 586 IPR011009 -
Vra5g2561 609 Pfam Protein kinase domain 331 584 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2561 609 PANTHER OS02G0152300 PROTEIN 10 266 - -
Vra5g2561 609 PANTHER OS02G0152300 PROTEIN 283 599 - -
Vra5g2561 609 CDD STK_N 13 151 - -
Vra5g2561 609 Gene3D Transferase(Phosphotransferase) domain 1 400 597 - -
Vra5g2561 609 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 12 127 - -
Vra5g2561 609 Gene3D HUPs 10 149 IPR014729 -
Vra5g2561 609 MobiDBLite consensus disorder prediction 202 270 - -
Vra5g2561 609 MobiDBLite consensus disorder prediction 275 303 - -
Vra5g2561 609 ProSiteProfiles Protein kinase domain profile. 327 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2561 609 Pfam Universal stress protein family 12 146 IPR006016 -
Vra5g2561 609 Gene3D Phosphorylase Kinase; domain 1 294 399 - -
Vra5g2561 609 ProSitePatterns Serine/Threonine protein kinases active-site signature. 445 457 IPR008271 GO:0004672|GO:0006468
Vra5g2561 609 MobiDBLite consensus disorder prediction 202 303 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2561 Vra-Chr5 32389683 32392770 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2561 280 597 Receptor kinase-like Gene Family AT5G12000 65.094 3.35e-153 452
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-IXb Vra5g2561 Pkinase 8.8e-42 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2561 - - vra:106760620 1171.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0293 9 2261245 2264519 Vra5g2561 5 32389683 32392770 PCT