Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2551 ATGACGCGGGGGAGGATCAGGGCAAGACTCCGTAGGAGGAGCCATCTTTACACGTTTGGTTGCCTGAAGCCAACCACCACTGAGGAGTTGCCCTATTCACTTCAAGGTCCTGGCTACTCGCGAACAGTCTTCTGCAACCAGCCTCAACTTCATGAAAAGAATTCCTTATTTTACTGCAAGAATGATATATCAACCACCAAGTACAATGTCATAACGTTTCTGCCTAAGGCATTGTTTGAGCAGTTTCGAAGGGTTGCTAACATATACTTTCTTTTGGCTGCTTGCCTTTCGGCTTCTCCAATTTCGCCTTTTAGCGCACTAAGCATGGTTGCACCTCTGGCGTTTGTTGTGGGACTTAGTATGGTGAAGGAGGCATTGGAGGATTCTCGCAGGTTCTTTCAGGATGTCAAAGTTAATCGACGGAAAGTCTGTCTCCATATAGGCAATGGCACTTTCGGCCTAAGATCGTGGCAGAAGATTGTCGTTGGGGATGTGGTCAAAGTAGAAAAAGATCAATTTTTTCCAGCCGACTTGCTTCTCTTGGCGTCAAGTTATGAGGATGGAATATGCTATGTGGAAACAATGAATTTAGATGGAGAGACCAACTTGAAGGTGAAGAGATCCTTGGAGGCTACCTTGTCTCTGGATAACGACGAGGCTTTTAAGGACTTCTCTGGAACAATATATTGTGAAGATCCAAATCCCAATCTTTACACTTTTATTGGGAACTTTGAGCATGAAAATCAGGTTTATCCTCTTGATCCTAGTCAAATTCTTCTCAGAGATTCGAAGCTTAGGAATACTGATCATGTTTATGGAGTGGTCATTTTCACTGGACATGACAGCAAAGTCATGCAGAATTCTACAAAATCCCCTTCAAAGAGAAGCACAATAGAAAAAAAGATGGATTATATCATATATACACTTTTCACTGTCCTTATATTGATATCTTTTATTAGTTCAATAGGATTTGTTGCAAAGACCAAATACCAAGCCCCAACTTGGTGGTATTTACGGCCTGACAATATTGAATACCAGTTTGATCCCGAGAAAATTGGATTGGCTGGAATGAGCCATCTGATTACTGCACTCATTCTCTATGGATATTTGATTCCTATCTCGCTTTATGTTTCAATTGAGGTTGTGAAGGTATTACAGGCTACCTTCATTGACCAAGACATTCAAATGTATGATGATGAAACTGGAACTCCAGCTGAAGCACGGACATCAAATTTGAATGAAGAGTTGGGTCAGGTAGACACCATCCTCTCTGATAAAACTGGCACTTTAACTTGCAACCAGATGGACTTTTTGAAGTGCTCCATTGCCGGTACTGCATATGGTGTTCGTTCCAGTGAGGTTGAACTTGCTGCAGCAAAGCAGATGGCTTCTGATCTTGAGGAGCCGGACATGGATATGTCTAATTTTTCCATTCCCGAGGAGAGTAAAGTGCCATGGGAAAATATCACTGTAGATGAAGAATCTGAACTGGGGAATGTTGCTAATTCCAAGAATGATGAAGATCAAAGGACTTCCATAAAGGGATTTGGTTTTGAAGATGATCGCCTCATGAATGGTAACTGGATGAAAGAACCCAATGCCGATTTCCTTTTACTGTTTTTCCGGATATTAGCAATTTGCCATACTGCCATCCCTGAACTAAATGAGGAGACCGACAATTGTACATATGAGGCCGAGTCACCTGATGAAGGGGCTTTTCTAGTAGCAGCCAGAGAATTTGGTTTTGAATTTTATAGGAGAACTCAATCAAGTGTTGTCATCCGCGAAAGATTTTCTGCCTCAGGACAAGTGGTTCAAAGAGAATATAAAATTTTGAATCTGCTGGATTTTACTAGCAAAAGAAAGCGCATGTCAGTGATAGTGCGTGACGAGGAGGGAAACATCATTCTTTTTTGCAAAGGAGCTGACAGTATCATATTTGATCGACTGTCTAAGAATGGAAAAATGTATTTGGACGCTACTACTAGACATTTGAATGAATATGGAGAAGCTGGCTTGAGAACACTAGCCTTGGCCTATAGAGAGCTTGACGACCTAGAGTACTCTGTTTGGAATAGCAAGTTTCAGAAGGCCAAAACAGCTATTGGGCCTGACAGAGAGGCAATGCTTGATCAGGTTTCAGATGTTATGGAAAGAGAGTTGATACTTGTTGGCGCTACTGCTGTGGAAGATAAACTACAGAAAGGGGTGCCACAATGCATTGACAAACTTGCTCAAGCTGGTCTAAAGATCTGGGTATTGACTGGGGATAAGATGGAAACTGCAATCAACATTGGATTTGCTTGTAGTTTACTTCGACAGGGCATGAGGCAAATCTGTATCACAATGAATTCAGATTCAGCAACCAATGATGCGAAAGAGGTCATCAAAGGAAACATTTTGAATCAAATCACCAATGCCTCGCAAATGATAAAGCTAGAAAAGGATCCACATGCTGCATTTGCATTAATTATTGATGGGAAAACTCTAACGTATGCTTTAGAAGATGATGTCAAACTCCAATTTTTGGGACTGGCTGTTGGCTGTGCGTCTGTTATTTGTTGTCGTGTGTCTCCAAAGCAAAAAGCACTGGTTACAAGGCTAGTGAAAGAAGGAACTGGGAAGACCACTTTGGCCATTGGTGATGGTGCAAATGATGTTGGCATGATTCAAGAAGCTGACATTGGTGTTGGAATCAGTGGGGTTGAAGGTATGCAGGCAGTGATGGCTAGTGACTTTTCTATTGCCCAATTCCGGTTTTTGGAGCGGCTTCTGGTAGTCCATGGACACTGGTGTTACAAGAGAATTGCACAAATGATATGCTATTTCTTCTACAAAAATATAGCATTTGGCCTCACCATTTTCTATTTTGAGGCCTTTGCGGGCTTCTCTGGACAATCGGTTTATGATGACTGGTACATGATATTGTTCAATGTTGTTCTTACATCATTGCCTGTCATTTCTCTTGGAGTTTTTGAACAAGATGTTCCATCAGAAGTTTGTTTACAGTTTCCTGCACTGTATCAGCAAGGACCCAAAAACTTGTTCTTTGACTGGTATAGAATCTTGGGATGGATGGGGAATGGTCTTTATTCCTCCCTCGTCATCTTCTTTCTTGTCATTATCATCTTCTATGACCAAGCATTCCGTCCCAATGGCCAGGTCGCAGACATGGCTGCTGTTGGTACCACGATGTTCACTTGCATCATCTGGACTGTCAATTGCCAGATTGCACTGACAATGAGCCATTTCACATGGATTCAACACCTCTTTGTGTGGGGCAGCATAACCACTTGGTACCTCTTTCTCTTGTTATACGGCATGCTTCCACCAAAACATAGCAAATCTGCCTACCAAATATTGGTGGAGGTTCTTGCTCCTGCTCCTATTTATTGGACAACAACCCTATTAGTAACAATTACATGCGTTCTTCCATATCTCGCTCACATATCCTTCCAAAGATGTGCTCATCCCATGGATCACCACATTATCCAAGAAATCAAGTACTACAAGAAGGACATTGAAGATCAACACATGTGGACGAGGGAGCGGTCAAAAGCAAGGCAAGAAACGAAGATTGGATTCACGGCAAGAGTGGAAGCAAAGATTAGGCATTTTAGAGGTAAGTTGCAGAAGAAGCAGCAGCAGCAGTCTTCAGTGGGGTCTTCAGTGGGGTCTTTGTCCCCATTATGA 3693 0.4219 MTRGRIRARLRRRSHLYTFGCLKPTTTEELPYSLQGPGYSRTVFCNQPQLHEKNSLFYCKNDISTTKYNVITFLPKALFEQFRRVANIYFLLAACLSASPISPFSALSMVAPLAFVVGLSMVKEALEDSRRFFQDVKVNRRKVCLHIGNGTFGLRSWQKIVVGDVVKVEKDQFFPADLLLLASSYEDGICYVETMNLDGETNLKVKRSLEATLSLDNDEAFKDFSGTIYCEDPNPNLYTFIGNFEHENQVYPLDPSQILLRDSKLRNTDHVYGVVIFTGHDSKVMQNSTKSPSKRSTIEKKMDYIIYTLFTVLILISFISSIGFVAKTKYQAPTWWYLRPDNIEYQFDPEKIGLAGMSHLITALILYGYLIPISLYVSIEVVKVLQATFIDQDIQMYDDETGTPAEARTSNLNEELGQVDTILSDKTGTLTCNQMDFLKCSIAGTAYGVRSSEVELAAAKQMASDLEEPDMDMSNFSIPEESKVPWENITVDEESELGNVANSKNDEDQRTSIKGFGFEDDRLMNGNWMKEPNADFLLLFFRILAICHTAIPELNEETDNCTYEAESPDEGAFLVAAREFGFEFYRRTQSSVVIRERFSASGQVVQREYKILNLLDFTSKRKRMSVIVRDEEGNIILFCKGADSIIFDRLSKNGKMYLDATTRHLNEYGEAGLRTLALAYRELDDLEYSVWNSKFQKAKTAIGPDREAMLDQVSDVMERELILVGATAVEDKLQKGVPQCIDKLAQAGLKIWVLTGDKMETAINIGFACSLLRQGMRQICITMNSDSATNDAKEVIKGNILNQITNASQMIKLEKDPHAAFALIIDGKTLTYALEDDVKLQFLGLAVGCASVICCRVSPKQKALVTRLVKEGTGKTTLAIGDGANDVGMIQEADIGVGISGVEGMQAVMASDFSIAQFRFLERLLVVHGHWCYKRIAQMICYFFYKNIAFGLTIFYFEAFAGFSGQSVYDDWYMILFNVVLTSLPVISLGVFEQDVPSEVCLQFPALYQQGPKNLFFDWYRILGWMGNGLYSSLVIFFLVIIIFYDQAFRPNGQVADMAAVGTTMFTCIIWTVNCQIALTMSHFTWIQHLFVWGSITTWYLFLLLYGMLPPKHSKSAYQILVEVLAPAPIYWTTTLLVTITCVLPYLAHISFQRCAHPMDHHIIQEIKYYKKDIEDQHMWTRERSKARQETKIGFTARVEAKIRHFRGKLQKKQQQQSSVGSSVGSLSPL* 1231
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2551 1230 Gene3D - 725 920 IPR023214 -
Vra5g2551 1230 SUPERFAMILY Calcium ATPase, transduction domain A 143 287 IPR008250 -
Vra5g2551 1230 MobiDBLite consensus disorder prediction 1208 1230 - -
Vra5g2551 1230 SUPERFAMILY Metal cation-transporting ATPase, ATP-binding domain N 523 686 IPR023299 GO:0000166
Vra5g2551 1230 ProSitePatterns E1-E2 ATPases phosphorylation site. 425 431 IPR018303 -
Vra5g2551 1230 CDD P-type_ATPase_APLT_Dnf-like 61 1040 - -
Vra5g2551 1230 Gene3D - 112 289 - -
Vra5g2551 1230 Pfam Cation transport ATPase (P-type) 547 651 - -
Vra5g2551 1230 TIGRFAM ATPase_P-type: HAD ATPase, P-type, family IC 847 961 IPR001757 GO:0005215|GO:0005524|GO:0016021|GO:0016887
Vra5g2551 1230 Pfam Phospholipid-translocating P-type ATPase C-terminal 908 1158 IPR032630 -
Vra5g2551 1230 SFLD p-type atpase 405 931 IPR044492 -
Vra5g2551 1230 MobiDBLite consensus disorder prediction 1212 1230 - -
Vra5g2551 1230 Pfam Phospholipid-translocating ATPase N-terminal 43 109 IPR032631 -
Vra5g2551 1230 PANTHER PHOSPHOLIPID-TRANSPORTING ATPASE 1 1216 - -
Vra5g2551 1230 PRINTS P-type cation-transporting ATPase superfamily signature 423 437 - -
Vra5g2551 1230 PRINTS P-type cation-transporting ATPase superfamily signature 880 899 - -
Vra5g2551 1230 SUPERFAMILY HAD-like 411 924 IPR036412 -
Vra5g2551 1230 Gene3D - 560 724 IPR023299 GO:0000166
Vra5g2551 1230 Gene3D - 435 471 IPR023299 GO:0000166
Vra5g2551 1230 SFLD Haloacid Dehalogenase 405 931 - -
Vra5g2551 1230 SUPERFAMILY Calcium ATPase, transmembrane domain M 54 1150 IPR023298 -
Vra5g2551 1230 TIGRFAM ATPase-Plipid: phospholipid-translocating P-type ATPase, flippase 58 1166 IPR006539 GO:0000287|GO:0005524|GO:0015914|GO:0016021|GO:0140326
Vra5g2551 1230 Gene3D - 420 434 IPR023214 -
Vra5g2551 1230 PANTHER PROBABLE PHOSPHOLIPID-TRANSPORTING ATPASE 1 1216 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2551 Vra-Chr5 32300784 32308029 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2551 1 1229 Primary Pumps ATPases AT1G17500 74.492 0.0 1914
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2551 K01530 - gmx:100778710 2199.86
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2551 5 32300784 32308029 Vra9g0274 9 2047991 2055532 PCT