Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2547 ATGGGTGCTTCGGGAAAGTGGTTCAAGTCATTCATTCCTTTTCGAAAGACCTCAACTTCAACAACTGATCAAGGTCGTGAAAACAAGAGCAAGAAGAAATGGAAGCTATGGAGGGCTTCTTCAGAAGGGTCCACCGTGAAGAAAGTTGGTGAAGCTGCTGTACCTGATTCTTCCTTTACTTATGCTGTGGCTGTGATGGTTCCCAAAGATTTCAAGCTCATCAAGCAGGAATGGGCTGCCATCCGTATTCAGGCTGTGTTTCGAGCCTTCTTGGCTAGACGAGCTTTGAGGGCCCTGAGGGCAGTGGTAAGGCTGCAAGCTATTTTTCGAGGCCGGTTAGTCAGAAAGCAAGCAGCCGTCACTCTGAGGTGTATGCAGGCTCTTGTTAGAGTTCAGGCTCATGTGAGAGCAAGGAATGTGAGGAATTCTCCTGAAGGGAAAGCAGTGCAGAAATTACTTGATGAGTATCGCAACCTGGCTGATCCTTTTAAGCAAATTGAGCAAGGATGGTGTGACATTCCTGGAACCGTGGATGAAGTTAAAGCAAAGCTACGACTGAGGCAAGAAGGAGCTATCAAGAGGGATAGAGCAATGGCATACTCTCTGTCCACACAGCAGTCAAGACTGGTTGCCAGTCCAAATCCTAAAGCCAATAAGCTATTGACTCCTCTCAAGCAGCACAACCTAAGCAACAAGAGCTTAGGATGTAGCTTGTTAGAACGCTGGATGGAGGCCAAGCCTTGGGAGAGTCCAAACTACAGGAAGAGTGAAGACCTTGTTCCTGCTTTTCAATCAAGAAAGAATGGTGTGACATCCAGGATTTCAGCAGTTAAACCTCTAATGACTAGCCAATCCACTCCATCATCTTCGGCCATAAGCTCTGAATACATGTGTGATGATAGTCCTGTGTCAACTTCTTATACAGCTGGATCTCCATCCTTTCCGTCCACCAATACTGTTTTAATGGACGCAACAGAGGAAAGAGAGGTTCATCAACCAAGCTACATGAATTTGACAGAATCAACCAAGGCTAAACTGAAAACTTGCAGGAGTTCTTCCCAGAATTCAAAGAGTCTTGTGATGGAGGATTGTGTGTCTCACAGCACAACGACAGGTTTGATAAATGGAGATTTTAGAAGCAGTTCTAATTCTGACCCTTCAGTTAACATATGGAAGGATTCTTGTGCAACACCTCTGAGGGCAAGTTATCAAAAACGACAAATTGGGATATGA 1233 0.4526 MGASGKWFKSFIPFRKTSTSTTDQGRENKSKKKWKLWRASSEGSTVKKVGEAAVPDSSFTYAVAVMVPKDFKLIKQEWAAIRIQAVFRAFLARRALRALRAVVRLQAIFRGRLVRKQAAVTLRCMQALVRVQAHVRARNVRNSPEGKAVQKLLDEYRNLADPFKQIEQGWCDIPGTVDEVKAKLRLRQEGAIKRDRAMAYSLSTQQSRLVASPNPKANKLLTPLKQHNLSNKSLGCSLLERWMEAKPWESPNYRKSEDLVPAFQSRKNGVTSRISAVKPLMTSQSTPSSSAISSEYMCDDSPVSTSYTAGSPSFPSTNTVLMDATEEREVHQPSYMNLTESTKAKLKTCRSSSQNSKSLVMEDCVSHSTTTGLINGDFRSSSNSDPSVNIWKDSCATPLRASYQKRQIGI* 411
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2547 410 SMART iq_5 75 97 IPR000048 GO:0005515
Vra5g2547 410 SMART iq_5 98 119 IPR000048 GO:0005515
Vra5g2547 410 ProSiteProfiles IQ motif profile. 76 104 IPR000048 GO:0005515
Vra5g2547 410 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 406 - -
Vra5g2547 410 Gene3D - 74 125 - -
Vra5g2547 410 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 36 118 IPR027417 -
Vra5g2547 410 Pfam IQ calmodulin-binding motif 78 97 IPR000048 GO:0005515
Vra5g2547 410 Pfam IQ calmodulin-binding motif 100 117 IPR000048 GO:0005515
Vra5g2547 410 PANTHER IQ-DOMAIN 5-RELATED 1 406 - -
Vra5g2547 410 ProSiteProfiles IQ motif profile. 100 127 IPR000048 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2547 Vra-Chr5 32261936 32264442 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2547 1 390 IQD Protein Family AT2G26180 44.819 1.95e-90 278
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2547 - - gmx:100788715 635.565
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2547 5 32261936 32264442 Vra9g0266 9 1978952 1982170 PCT