Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2543 ATGGAGCATTTTCCTTCTCAACATGGCTTGCAATTCGAATCTGAACCTGGCGCCTACCATGGTGATGCGAATGATGAGCTCGCAAAACCCTCCCCCAATCCTCGTGATTCGTCTTCAGGGTTAGTTACTTCTGTAGTGGGTGGTGGTACATGGGTTTTGTGGAGAAAGGGGTTTTGCAGCGTTAGGAAACTTTTCGTTGGGGGCATTTCATGGGAAACTTCTCAAGAATCATTTTTTAATTACTTCAGCAAATATGGAGAAGTAACGGATTCGGTAATAATGACAAATAAACTTTCTGGAAGGCCACGCGGCTTTGGCTTTGTAACATTTGCCGATTCAGCTGTAGCAGATGAAGTTTTGGCCCAGGAACATACCATTGATGGCAGAGTGGTTGAAGTGAAGAGGACAGTCCCTAGGGAGGACATGGAAGGAATTGGAGTACTAAAAACAAAGAAGATATTTGTAGGGGGAATACCCCAACTTTTCACTGACGATGAGTTGAGGGGATACTTTTCGCCTTATGGCGATGTTGTTGAGTGCCAAATCATGTTAGATCACAATACTGGGCGATCTAGAGGCTTTGGATTTGTAACTTTTGACAACGAAGATTCAGTTGAAAAGGTATTTTCGGCGGGAAAAATACATGAAATTGGAGGCAAGCAGGTTGAGATTAAGAGAGCTGAGCCCAAAAGATCTGGAGTTGATCACAGCAGTACCTCACGAAAGTCATATGGTGGTTTTAGCAATGGAATGGATGGATATGGTGGGAATAGCTCTAGAAATCGTAATCATGCAAAAAGAGGTGGACAGTATACAGATTCTGGAATGAACGGAGCATATGGCTACTTTGAGGGAAGCTTTGGCGGAAGTGCTGCCACTGTTTATGGTGGTTATTGTGGGTATGGTTATGGCTTTGGATATGGTGGACCGATGTATTGCTATGGCGGCTATGGACTGAATTCTTATGGTAATCCTGGGGTTTATGGTGGTGGCACTATTTCCCATGGAGATGGTAATGCATATGGAAGAAACGGTAGTTTCAACCGCAGCAGTGGCTATGATGGTGGGAAAGGGGCTGAGAAGGACGATGGTCCTACAACCGGAAGGTACCATCCTTACTGGAAATGA 1128 0.4459 MEHFPSQHGLQFESEPGAYHGDANDELAKPSPNPRDSSSGLVTSVVGGGTWVLWRKGFCSVRKLFVGGISWETSQESFFNYFSKYGEVTDSVIMTNKLSGRPRGFGFVTFADSAVADEVLAQEHTIDGRVVEVKRTVPREDMEGIGVLKTKKIFVGGIPQLFTDDELRGYFSPYGDVVECQIMLDHNTGRSRGFGFVTFDNEDSVEKVFSAGKIHEIGGKQVEIKRAEPKRSGVDHSSTSRKSYGGFSNGMDGYGGNSSRNRNHAKRGGQYTDSGMNGAYGYFEGSFGGSAATVYGGYCGYGYGFGYGGPMYCYGGYGLNSYGNPGVYGGGTISHGDGNAYGRNGSFNRSSGYDGGKGAEKDDGPTTGRYHPYWK* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2543 375 Gene3D - 146 281 IPR012677 -
Vra5g2543 375 MobiDBLite consensus disorder prediction 351 375 - -
Vra5g2543 375 Gene3D - 60 143 IPR012677 -
Vra5g2543 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 62 138 IPR000504 GO:0003723
Vra5g2543 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 153 221 IPR000504 GO:0003723
Vra5g2543 375 Pfam RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) 64 131 IPR000504 GO:0003723
Vra5g2543 375 SMART rrm1_1 63 134 IPR000504 GO:0003723
Vra5g2543 375 SMART rrm1_1 152 225 IPR000504 GO:0003723
Vra5g2543 375 MobiDBLite consensus disorder prediction 1 41 - -
Vra5g2543 375 SUPERFAMILY RNA-binding domain, RBD 149 257 IPR035979 GO:0003676
Vra5g2543 375 ProSiteProfiles Eukaryotic RNA Recognition Motif (RRM) profile. 151 229 IPR000504 GO:0003723
Vra5g2543 375 PANTHER RNA-BINDING (RRM/RBD/RNP MOTIFS) FAMILY PROTEIN 54 373 - -
Vra5g2543 375 MobiDBLite consensus disorder prediction 238 270 - -
Vra5g2543 375 MobiDBLite consensus disorder prediction 226 270 - -
Vra5g2543 375 PANTHER BOULE-RELATED 54 373 IPR037366 GO:0003729
Vra5g2543 375 SUPERFAMILY RNA-binding domain, RBD 60 142 IPR035979 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2543 Vra-Chr5 32246076 32249454 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2543 64 241 Eukaryotic Initiation Factors Gene Family AT1G71770 27.368 1.05e-11 64.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2543 K12741 - gmx:100818080 558.91