Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2538 ATGTCTAATTTGACTTCTGCATCCGGTGAAGCTAGTGCTTCTTCAGGCAACAGAACCGAAATTGGTTCTGATTACTCGCAGCAATACTTTGCTAGCCCACCAACTCAAACGCAGGCTCCAACAAAGAAAAAGAGAAACCTTCCAGGCAACCCAGACCCGGAGGCTGAAGTTGTGGCGTTGTCTCCAAAGACTCTCTTGGCCACAAACAGGTTCGTCTGTGAGATCTGCAACAAAGGGTTTCAAAGAGATCAGAATCTCCAGCTTCACAGAAGAGGGCACAACTTACCATGGAAGCTGAAGCAGAGAACCGGCAAGGAGATAAGGAAGAAGGTTTATGTGTGCCCAGAAGCAAGTTGCGTCCACCACGACCCTTCAAGGGCCCTGGGGGACCTAACTGGCATCAAGAAGCACTTCTGCAGAAAGCACGGCGAGAAGAAGTGGAAATGCGACAAGTGCTCCAAGAAGTATGCTGTTCAATCAGACTGGAAAGCTCACTCAAAGACCTGTGGCACAAGAGAGTACAGATGTGACTGTGGAACTCTCTTCTCAAGGAGGGACAGTTTCATAACCCACAGAGCCTTCTGTGATGCATTAGCAGAGGAGAGTGCAAGATCTGTGACAGGCATGGACATTGGCATAGGCATTCCCAGCAACTCAGCTACAACGCCAACGACACCTCACAAAGCACCTTCAGCAGGAGTAGTGATACCTTCATCCTCTCATCATCATCATCATCATCATCATCATCATGAAGACATCCATGGTAGCAATTTCCCATTGAAGAAAGAGCAACAAGGTTTCATACCCCCTTGGCTTGGACAACCACCCTCCACCATTGATCTCTCCTCCTCCTCCTCCTCATTCTTCTCTCAGCAGGATCATGTGAGCAATCTCCATGAAAACCCTAACCCTAGAGGTGGTGGTGGTGGAGGTGGTCCCACTCTCCCTCCCTACCCAACAGCACCTTCCCCTCCTCACATGTCAGCCACAGCGTTGCTGCAGAAAGCAGCCCAAATGGGAGCTACCATGAGCAAAACTGGCTCCATGATTAGGACCCACCAACAGGCTCACGTGTCTGCCGACCCTTTGAATTTGTCCTCACGTGACGACCAGATGACCCCCACTTCCAACACCACCACTCCCCATGGCTTGGTACCTTTCGGGAATAAAGCTGTTCCTGGTGTTGGTGTTGGTGTTTCTTCATCACTCCTTCACCATGTTATTAACTCTTTCTCTTCCCCTTTTGAAGGGACTTCTTTTGAGGACCCTTTCAATGGTGCTGTCACGAACACAACCGCCGCTGATGACCGTGCCGGTGGTGGCGGCGGCGGCGGCGGAGGAGGAGGAGGAGGAAATTATAATGAGGCCATGACTAGAGATTTCTTGGGTCTTAGACCCCTCTCTCACACTGATATTCTCAACATTGCTGGCATGGGAAACTGCATGAACTCCCAACATAACCAAACCCAAAACCCTTGGCAAGGTTAG 1488 0.5027 MSNLTSASGEASASSGNRTEIGSDYSQQYFASPPTQTQAPTKKKRNLPGNPDPEAEVVALSPKTLLATNRFVCEICNKGFQRDQNLQLHRRGHNLPWKLKQRTGKEIRKKVYVCPEASCVHHDPSRALGDLTGIKKHFCRKHGEKKWKCDKCSKKYAVQSDWKAHSKTCGTREYRCDCGTLFSRRDSFITHRAFCDALAEESARSVTGMDIGIGIPSNSATTPTTPHKAPSAGVVIPSSSHHHHHHHHHHEDIHGSNFPLKKEQQGFIPPWLGQPPSTIDLSSSSSSFFSQQDHVSNLHENPNPRGGGGGGGPTLPPYPTAPSPPHMSATALLQKAAQMGATMSKTGSMIRTHQQAHVSADPLNLSSRDDQMTPTSNTTTPHGLVPFGNKAVPGVGVGVSSSLLHHVINSFSSPFEGTSFEDPFNGAVTNTTAADDRAGGGGGGGGGGGGGNYNEAMTRDFLGLRPLSHTDILNIAGMGNCMNSQHNQTQNPWQG* 496
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2538 495 MobiDBLite consensus disorder prediction 335 384 - -
Vra5g2538 495 MobiDBLite consensus disorder prediction 218 385 - -
Vra5g2538 495 MobiDBLite consensus disorder prediction 276 299 - -
Vra5g2538 495 ProSiteProfiles Zinc finger C2H2 type domain profile. 71 93 IPR013087 -
Vra5g2538 495 Pfam Zinc finger, C2H2 type 71 93 IPR013087 -
Vra5g2538 495 MobiDBLite consensus disorder prediction 428 451 - -
Vra5g2538 495 PANTHER SERINE/THREONINE-PROTEIN KINASE RIO 3 480 - -
Vra5g2538 495 ProSitePatterns Zinc finger C2H2 type domain signature. 73 93 IPR013087 -
Vra5g2538 495 SUPERFAMILY beta-beta-alpha zinc fingers 70 167 IPR036236 -
Vra5g2538 495 Gene3D Classic Zinc Finger 125 205 - -
Vra5g2538 495 Gene3D Classic Zinc Finger 50 120 - -
Vra5g2538 495 PANTHER PROTEIN INDETERMINATE-DOMAIN 7 3 480 - -
Vra5g2538 495 SMART c2h2final6 112 142 IPR013087 -
Vra5g2538 495 SMART c2h2final6 147 167 IPR013087 -
Vra5g2538 495 SMART c2h2final6 71 93 IPR013087 -
Vra5g2538 495 MobiDBLite consensus disorder prediction 1 54 - -
Vra5g2538 495 MobiDBLite consensus disorder prediction 1 44 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2538 Vra-Chr5 32220960 32224173 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2538 1 484 IDZ Gene Family AT1G55110 46.931 4.89e-126 373
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2H2 Vra5g2538 zf-C2H2 0.005 CL0361
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2538 K25870 - gmx:100819692 660.218
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2538 5 32220960 32224173 Vra9g0257 9 1899659 1902979 PCT