Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2536 ATGGAAGGTGGGACGAGTTCGTCGAGGAGCACCATACAGGCTTGTGCTGCTTGTAAGTACCAACGCAGGAAGTGCGGACCCAACTGCATTCTCGCACCTTTCTTTCCTCATTATCGCCAAAAACAGTTCCTTAATGCTCACAAGCTTTTCGGAGTTGGCAAAATCACCAGCATGATCAAGCCTCTTGACCCTGTTAACAGAAACTCAGCCATCAACTCCATTATCTTTGAGTCTGATATGAGAGCCAAAGACCCTGTTGGGGGCTGCTTTAGAACCATTCTTTACTTGCAATCTGTCATTGCTTCTGCAGAATCTGAACTCCAATTTCTCCTTCAACACCTTGCCTTCTTCAGAGCACAACCTCTTCATTCCATCGCCACACCACAACCACCTTCCTCCTCCCACCACCCTTATCATCAAGGAATGTCACTTCAAGAATCAAAACAAGAACTTGGAAAGGATCCCTCACAACTTCAACGACAACAACAACCAAAAGATCCCTGCTTTAATTACAATGCATTGCAAGAAGATATGAACGTGTCCGACATTGACAACTTAGTACCTTTCTCTCCGTGGCTATCGCCGCTCGATGATATCAGCCAATATCAACATCCCTGA 618 0.4563 MEGGTSSSRSTIQACAACKYQRRKCGPNCILAPFFPHYRQKQFLNAHKLFGVGKITSMIKPLDPVNRNSAINSIIFESDMRAKDPVGGCFRTILYLQSVIASAESELQFLLQHLAFFRAQPLHSIATPQPPSSSHHPYHQGMSLQESKQELGKDPSQLQRQQQPKDPCFNYNALQEDMNVSDIDNLVPFSPWLSPLDDISQYQHP* 206
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2536 205 ProSiteProfiles LOB domain profile. 13 114 IPR004883 -
Vra5g2536 205 MobiDBLite consensus disorder prediction 126 170 - -
Vra5g2536 205 PANTHER LOB DOMAIN-CONTAINING PROTEIN 4-RELATED 9 204 - -
Vra5g2536 205 PANTHER LOB DOMAIN PROTEIN 9 204 - -
Vra5g2536 205 Pfam Lateral organ boundaries (LOB) domain 14 109 IPR004883 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2536 Vra-Chr5 32199490 32200107 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2536 13 150 AS2 family AT3G13850 50.000 4.02e-42 141
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF LOB Vra5g2536 LOB 2.2e-32 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2536 - - vun:114184788 314.694
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2536 5 32199490 32200107 Vra9g0254 9 1882331 1883724 PCT