Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2535 ATGCAACCATGCATCATTCATTCATTTTCATTCTCCATGGCAACCAACCAACCTTCCAAAAGGCTCCAATACCCACTCGACTCTTCCTCCTACAAGCTCCTCAACGAGATCGGCGCCGGCGTCAGCGCCATCGTCTACAAAGCCATCTGCATCCCCATGAACTCCGCCGCTGTCGCAATCAAATCCATAGACCTCGACCGTTCCCGCCCCGACTTGGACGACGTTCGTCGCGAGGCCAAAACCCTGTCCCTCCTTTCACACCCTAACATCCTCAAAGCACACTGCTCCTTCACCGTCGACCGCCGCCTCTGGGTGGTCATGCCCTTCATGGCCGCAGGATCTCTCCAATCCATCATCTCTCACTCCCACCCCAACGGCTTAACCGAGCCCTGCATCGCGGTGGTTCTCAGAGACACCCTCAATGCCCTCTCCTACCTCCACGGCCAGGGCCACCTCCACCGTGACATAAAAGCCGGGAATATCCTCGTTGACACAAACGGACAGGTAAAGCTCGCGGATTTCGGCGTGTCGGCTTCCATCTACGAGTCCTCCACGTGTTCCTCTCTCAAGTTCACCGATGTTGCAGGCACGCCGTATTGGATGGCTCCGGAGGTGATTCACTCGCATACGGGGTACAGTTTCAAGGCTGATATATGGTCCTTTGGGATAACCGCTTTGGAGCTCGCGCATGGAAGGCCTCCTCTCTCCCATCTTCCACCTTCAAAGTCCATGATGCTCAAGATCACCAAGCGGTTTCGTTTCTCCGATTTGGATAAATATAGAAAGGGAAACGGGAATAAGTTCTCCAAGGCGTTCAAGGACATGGTGGCTTCTTGTCTGGACCAAGATCCTTCCAAAAGACCCACTGCTGATAAGTTGCTGAAACACCCCTTTTTTAAAAACTGCAAAGGAACTGATTTTCTGGTCAAGAACGTGCTTTTAGGGTTGCCCAGTGTGGAGAAAAGGTACAAGGAGAGCAAGGTTAACGAACATGCAGATGGGGGAGGCCACGATGATGATGATGATGATGAAGACCCCGCCATGCAGGTGAAGGAAAGAAGGATAAGTGGGTGGAACTTCAACCAAGACGGGTTGGAGCTTGATCCTGTGTTTCCAAACGATGATGCGGGGGCCAAAAAGGCTGAACTTGGAGGGGAAAGTGTTATGAGAAAAATGGAGGAGCTTGTTAATGTTGGTGGAAGTGAAGCAGGAAGTGGTGGTGGCGGTGTGAAGAAGAGGCAGAAGATGTTGGCGACTCTGAATGTGCTGAAAGGAAGCTTGGAACAAGAGCTGTTGGAAGTGAAGTTTCTTGTGAATATGATAAGAGGAGAGGAGGAGAGTGATCGTGATCAAGTGGCTGCTGCTGCTTCTGCTGATCATAATGAGGAGAAGGAGATTTCTAAGCTCAAGGCTGCACTAGAAAATGAGAGGAAGAAGAACTTGCAGCTGGAGTTGCAGCTCCACAACTGCAAGATTCAACTTTCTTCTCTCAATATTTCCAACTAA 1506 0.5086 MQPCIIHSFSFSMATNQPSKRLQYPLDSSSYKLLNEIGAGVSAIVYKAICIPMNSAAVAIKSIDLDRSRPDLDDVRREAKTLSLLSHPNILKAHCSFTVDRRLWVVMPFMAAGSLQSIISHSHPNGLTEPCIAVVLRDTLNALSYLHGQGHLHRDIKAGNILVDTNGQVKLADFGVSASIYESSTCSSLKFTDVAGTPYWMAPEVIHSHTGYSFKADIWSFGITALELAHGRPPLSHLPPSKSMMLKITKRFRFSDLDKYRKGNGNKFSKAFKDMVASCLDQDPSKRPTADKLLKHPFFKNCKGTDFLVKNVLLGLPSVEKRYKESKVNEHADGGGHDDDDDDEDPAMQVKERRISGWNFNQDGLELDPVFPNDDAGAKKAELGGESVMRKMEELVNVGGSEAGSGGGGVKKRQKMLATLNVLKGSLEQELLEVKFLVNMIRGEEESDRDQVAAAASADHNEEKEISKLKAALENERKKNLQLELQLHNCKIQLSSLNISN* 502
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2535 501 ProSitePatterns Protein kinases ATP-binding region signature. 37 61 IPR017441 GO:0005524
Vra5g2535 501 Pfam Protein kinase domain 31 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2535 501 SUPERFAMILY Protein kinase-like (PK-like) 19 304 IPR011009 -
Vra5g2535 501 Coils Coil 459 493 - -
Vra5g2535 501 Gene3D Phosphorylase Kinase; domain 1 19 109 - -
Vra5g2535 501 Gene3D Transferase(Phosphotransferase) domain 1 113 343 - -
Vra5g2535 501 ProSiteProfiles Protein kinase domain profile. 31 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2535 501 SMART serkin_6 31 299 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2535 501 MobiDBLite consensus disorder prediction 325 347 - -
Vra5g2535 501 PANTHER SERINE/THREONINE-PROTEIN KINASE BLUS1 16 492 - -
Vra5g2535 501 PANTHER SERINE/THREONINE-PROTEIN KINASE FRAY2 16 492 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2535 Vra-Chr5 32196252 32198024 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2535 21 482 MAP Kinase Kinase Kinase Kinase AT4G14480 55.967 1.78e-180 513
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK STE_STE20-Fray Vra5g2535 Pkinase 1.4e-60 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2535 K08835 - gmx:100820227 742.265