Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2532 ATGGGATTGCAGCTCATTTTCCTGCTAATTAAGCTACATTTTGTTACATGTACACCCCATCTTCATGAATATGCTGCAAGCTATTTGCACCATTCGAGAATCCGAAGCCCTTCAAGCATTGCATTCCCACCCTCAGAGTCACCTACTAGAGTTCCTGCTAGTTCTACACTTCCACCTTCCAAGGCATTCCCCAAAAGGAAATGGACGCACAGTTCTATGGACTCTCCAATTCCACACCACAAGCATCACCACCATTCCAGAAGATATTTCAGCAACCAAGCTCCTGGACCAACCTTTTCAATTAACCCCCATACTCATCAAGGTCCTCCTCCTGTCTTCAAATCACAACATTCATTCTCTTCACCTGTAAATGCACCCGCACAAGCTCCTGCACCAGCACCAATACTTCCATCACAGCACTTGAATGGTTCATCAGTGAAGAAAACAAGAACTCCACCAGCAGCATATGCTTTGGTTCTACCATCTCCACCGCCTAACAAAGATTGTATGTCACTGACATGCTCTGAGCCCTTGACATATACACTTCCTGGATCACCTTGTGGTTGTGTTTGGCCACTCCAAGTTAAACTTCGCGTCAGCATTGCAATATACAAATTTTTTCCTTCGGTTTCAAAGCTGGCCAAAGAAATTGCAGCTAGTGTTTTGCTGAACCGTAATCAAGTACGTATTGTGGGAGCCGATGCGACTACTCAGCAGCTCGAGAAAACCACTGTTCTCATAAACTTGGTACCCCAAGGAGTGAAATTTGATGATACAACAGCTCTTTTAATATATAAGAAATTCTGGCAGAGAGAGATTCTCAGTGATTCTTCTACCTTCGGTTCCTATGAAGTGCTCTATGTTCATTATCCAGGTCTTCCACCATCTCCACCTTCAAATGTTTACGGTATAGATGTTGAACCATACCCTAGTCACGACAACAATGTAACAATAATAAAACCTTTAGGAGTAAACGTTTCAAGGAAGCAAAAAGAAGGGAGTGGTGGAAGAATGCTTATTATGATCATCCTTTCATCTTTGACCGCCTTCGTTCTATTCATTGGACTTGCATGGCTTTTTCTCTTGAAATGTGGTTCCAGCACTCTTGAACCTGGACATATTCCAGATGCCAAAATGTCATCCTCTTCAAAACGATCAGGAACTGCCAGTGTTAGGTCATTGACTTATGCTAGCATGCCAGGTTCTAGATCAATGTCCTTCAGTTCTGGAACAATAATCTATGCAGGACCAGCTAAAATATTTTCTTTGAACGAAATCGAGAAAGCAACAAATAACTTCAATTCTTCAAGCATATTAGGAGAAGGTGGCTTCGGTCTTGTTTATAAGGGTGACTTAAATGATGGCAGAGAGGTGGCTGTGAAGATTCTCAAAAGGGATGACCAGCATGGTGACCATGATTTCTTTGCAGAGTCAGAGATGCTTAGCTGCTTGCACCATAGGAATTTAGTTAAATTGATAGGTATATGCACAGAGAAAGAGACTCGCTGCTTAGTTTATGAGCTTGTCCCTAATGGCAGCGTGGAATCCCACTTACATGGTGTGGATAAGGAAACCGAACCACTTGATTGGAATGCCCGGATGACGATTGCACTTGGTGCAGCTAGAGGATTAGCCTATCTGCATGAAGATTGTAATCCATGTGTCATACACAGAGACTTCAAATCCAGCAACATCTTATTGGAATACGATTTTGTACCCAAAGTTTCAGATTTTGGCTTGGCTAGAACAACATTGAACGAGGGGAACAAGCCCATTTCAACTCATGTAATTGGTACATTTGGCTACGTAGCTCCTGAATATGCAATGACAGGACATCTTCTTGTCAAAAGTGATGTTTACAGCTATGGAGTTGTACTCCTTGAGCTGTTAAGTGGAAGAAAGCCTGTGGATTTGTCACAGCCACCAGGCCAAGAAAACCTTGTTGCTTGGGCTCGTCCACTTCTTACAAGTAAGGAGGGTTTGCAGAAGATCATAGACCCAATTATGAAGGACAGTGTTTCCATTGATACCATTGTAAAGGTTGCAGCAATTGCATCCATGTGCGTGCAATCAGAAGTCACTCAGCGTCCTTTTATGGGTGAAGTTGTTCAGGCCTTGACATTGGTATGCAGTGAGTTTGAGGAAACAAGAGTTCTGTAA 2160 0.4273 MGLQLIFLLIKLHFVTCTPHLHEYAASYLHHSRIRSPSSIAFPPSESPTRVPASSTLPPSKAFPKRKWTHSSMDSPIPHHKHHHHSRRYFSNQAPGPTFSINPHTHQGPPPVFKSQHSFSSPVNAPAQAPAPAPILPSQHLNGSSVKKTRTPPAAYALVLPSPPPNKDCMSLTCSEPLTYTLPGSPCGCVWPLQVKLRVSIAIYKFFPSVSKLAKEIAASVLLNRNQVRIVGADATTQQLEKTTVLINLVPQGVKFDDTTALLIYKKFWQREILSDSSTFGSYEVLYVHYPGLPPSPPSNVYGIDVEPYPSHDNNVTIIKPLGVNVSRKQKEGSGGRMLIMIILSSLTAFVLFIGLAWLFLLKCGSSTLEPGHIPDAKMSSSSKRSGTASVRSLTYASMPGSRSMSFSSGTIIYAGPAKIFSLNEIEKATNNFNSSSILGEGGFGLVYKGDLNDGREVAVKILKRDDQHGDHDFFAESEMLSCLHHRNLVKLIGICTEKETRCLVYELVPNGSVESHLHGVDKETEPLDWNARMTIALGAARGLAYLHEDCNPCVIHRDFKSSNILLEYDFVPKVSDFGLARTTLNEGNKPISTHVIGTFGYVAPEYAMTGHLLVKSDVYSYGVVLLELLSGRKPVDLSQPPGQENLVAWARPLLTSKEGLQKIIDPIMKDSVSIDTIVKVAAIASMCVQSEVTQRPFMGEVVQALTLVCSEFEETRVL* 720
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2532 719 Gene3D Transferase(Phosphotransferase) domain 1 509 717 - -
Vra5g2532 719 CDD STKc_IRAK 439 707 - -
Vra5g2532 719 PANTHER OS01G0750732 PROTEIN 43 717 - -
Vra5g2532 719 MobiDBLite consensus disorder prediction 40 56 - -
Vra5g2532 719 Pfam Protein tyrosine and serine/threonine kinase 436 706 IPR001245 GO:0004672|GO:0006468
Vra5g2532 719 MobiDBLite consensus disorder prediction 91 125 - -
Vra5g2532 719 ProSitePatterns Protein kinases ATP-binding region signature. 439 461 IPR017441 GO:0005524
Vra5g2532 719 ProSiteProfiles Protein kinase domain profile. 433 708 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2532 719 Gene3D Phosphorylase Kinase; domain 1 407 508 - -
Vra5g2532 719 SUPERFAMILY Protein kinase-like (PK-like) 413 707 IPR011009 -
Vra5g2532 719 MobiDBLite consensus disorder prediction 40 135 - -
Vra5g2532 719 PANTHER OS01G0750732 PROTEIN 43 717 - -
Vra5g2532 719 ProSitePatterns Serine/Threonine protein kinases active-site signature. 555 567 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2532 Vra-Chr5 32173195 32177222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2532 166 719 Receptor kinase-like Gene Family AT5G56890 59.786 0.0 661
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_Extensin Vra5g2532 PK_Tyr_Ser-Thr 4.5e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2532 - - gmx:100798578 1152.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2532 5 32173195 32177222 Vra9g0251 9 1851093 1856958 PCT