Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2520 ATGGAGGAAATGTCTAAGTTCCTCATCCATGGAACAATTGAAGCTACCATCTTCAACGCCACACCTTACTCACCTTTCTTTCCCTTCAATTGTGTACATAGAAAAGGAAAGCCTGCATATGTATCCATTAGGATAGGAAAACAGAAGGTGGCGAAAACGACACAAGAACGTGAACGTGTGTGGAACCAAACCTTTCAGATTTTGTGTGCTCATCCAGAAGATTCAACTATCACCATTACACTGAAGACATCATGCTTCGTTTTGGGAAAATTCCACATGCAGGCCAAGCGGTTGAAGGAAGAGAGTTTGATCAATGGATTGTTCCCTCTCCTCATGGAGAATGGAAAACCAAATCCACAACTAAAGTTACGATTTATGTTGTGGTTCAAGCCAGCAGAAATGGAACCAAGTTGGAGAAAGATACTAAGCAATGGGGAGTTTCAAGGGCTTAGGGATGCTACTTTCCCACAAAGGTCCAACTGCGAGGTTAAACTCTATCATGATGCTCACCATTCATCTACCTTCCACCCTCCTTTTGACCTTTGTGGCGCTCCATTAAAGCTATGGGAAGATGTCTATAAAGCCATTGAGGGTGCAAAATATTTGATTTATATTGCAGGCTGGTCTTTCAATCCCAAGATGGTTCTGGTTAGAGATCCTCAAACAGAAATCCCTCATGCTAGGGAGATAAATCTGGGTGAGTTATTGAAGAAGAAGGCAGAGGAAGGAGTGGCTGTGAGGGTTATGATTTGGGATGATGAAACATCTTTGCCTTTGATTAAGAACAAAGGTGTGATGAACACTCATGACGAGGAAGCTTTTGCCTACTTCAAACACACTAAAGTAATATGCAGAAAGTGTCCCAGGTTACACCACAAGTTCCCCACACTCTTTGCTCACCATCAGAAGACCATAACTGTGGACACCAGAACACCCTACTCTGTTCATGCCAGAGAAATTATGAGCTTTCTGGGTGGTTTAGATTTGTGTGGTGGCCGCTATGACACAGAAAAACACTCATTGTTTCAGACACTTGCTGAGGAATCCGATTACCATGACTTCTACCAGACAAACATTGCAAAAGCTAGCCTAAATAAAGGAGGACCGAGAGAGCCTTGGCATGATGCTCATGCTTGTGTTATTGGTGAGGCTGCATGGGATGTGTTAACCAATTTTGAGCAAAGATGGACAAAGCAGTGCGATCCTTCTCTTCTAGTTCCTGCCAACACTCTAGAAAATCTCATTCCCACATACTCGAGCACTCCAACAGAAAGGAATTGGAAAGTCCAAGTATATAGATCAATTGACCATGTATCTGCTAGCCAGTTGTTTAGAAGGCTAACTGTGGAGAGAAGCATCCATGAAGCTTATGTTGAAGCTATTAGGCGTGCTGATAGGTTTGTATACATTGAAAACCAGTATTTTGTTGGAGGGTGTCACTTGTGGCAAGAAGATAGGCATAGTGGATGCAGCAATCTGATTCCTGTTGAGATTGCACTCAAGGTGGTTAGTAAGATCAAAGCAAGAGAGAGGTTTGCAGTGTACATAGTCATACCAATGTGGCCAGAAGGAGTGCCTGAAAGTGAACCAGTTCAAGATATACTTCACTGGACCAGAGAAACAATGACAATGATGTATTGGTTGATTGGAGAAGCAATAACAGAAAGTGGGGAGCCAGGGCATCCAAGAGACTACTTGAATTTCTTCTGCCTTGCAAACAGGGAAAAGAAGGAAAAGGAGGAGTTTCTTCCTCCATTTTCTCCACATCCTGCAACACAATACTGGAATGCCCAAAAGAACAGAAGGTTCCCGATTTATGTTCATTCAAAGGTGATGATAGTGGACGACATATACATATTAATAGGATCAGCCAATGTGAACCAACGATCCATGGATGGACAAAGGGACACTGAGATTGCCATTGGGGCATACCAGTTTCAAGATGGAGTTGATCGCCACGTAAATCGTGGTGATATTCATGCATACAGAATGTCACTGTGGTATGAGCACACAGGAAGTGCTGAGGAACTGTTCTTAGAGCCAGAAAGTTTGGCCTGTGTGCAGAGAATGAGGTCAATAGGGGATCATATGTGGGAAATGTACAGCAGTGAAGAAATTGTAGATATGGAAGGTGTGCACCTTGTAAGGTACCCTGTGAAAATAACTCAAGAAGGGTATGTGGAGGACCCAGATGATGGCGGTGATCATTTTCCTGATACAAAATCTCCTGTGAGGGGGAAGAGATCAAAATTCTTAAACCCTGCCTTTACCACTTAA 2277 0.43 MEEMSKFLIHGTIEATIFNATPYSPFFPFNCVHRKGKPAYVSIRIGKQKVAKTTQERERVWNQTFQILCAHPEDSTITITLKTSCFVLGKFHMQAKRLKEESLINGLFPLLMENGKPNPQLKLRFMLWFKPAEMEPSWRKILSNGEFQGLRDATFPQRSNCEVKLYHDAHHSSTFHPPFDLCGAPLKLWEDVYKAIEGAKYLIYIAGWSFNPKMVLVRDPQTEIPHAREINLGELLKKKAEEGVAVRVMIWDDETSLPLIKNKGVMNTHDEEAFAYFKHTKVICRKCPRLHHKFPTLFAHHQKTITVDTRTPYSVHAREIMSFLGGLDLCGGRYDTEKHSLFQTLAEESDYHDFYQTNIAKASLNKGGPREPWHDAHACVIGEAAWDVLTNFEQRWTKQCDPSLLVPANTLENLIPTYSSTPTERNWKVQVYRSIDHVSASQLFRRLTVERSIHEAYVEAIRRADRFVYIENQYFVGGCHLWQEDRHSGCSNLIPVEIALKVVSKIKARERFAVYIVIPMWPEGVPESEPVQDILHWTRETMTMMYWLIGEAITESGEPGHPRDYLNFFCLANREKKEKEEFLPPFSPHPATQYWNAQKNRRFPIYVHSKVMIVDDIYILIGSANVNQRSMDGQRDTEIAIGAYQFQDGVDRHVNRGDIHAYRMSLWYEHTGSAEELFLEPESLACVQRMRSIGDHMWEMYSSEEIVDMEGVHLVRYPVKITQEGYVEDPDDGGDHFPDTKSPVRGKRSKFLNPAFTT* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2520 758 MobiDBLite consensus disorder prediction 726 746 - -
Vra5g2520 758 Pfam Phospholipase D Active site motif 297 333 IPR001736 GO:0003824
Vra5g2520 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 296 333 IPR001736 GO:0003824
Vra5g2520 758 SUPERFAMILY Phospholipase D/nuclease 423 687 - -
Vra5g2520 758 Pfam C2 domain 39 110 IPR000008 -
Vra5g2520 758 ProSiteProfiles Phospholipase D phosphodiesterase active site profile. 603 630 IPR001736 GO:0003824
Vra5g2520 758 MobiDBLite consensus disorder prediction 726 748 - -
Vra5g2520 758 PANTHER PHOSPHOLIPASE D ALPHA 5 758 - -
Vra5g2520 758 Gene3D Endonuclease Chain A 445 657 - -
Vra5g2520 758 Gene3D Endonuclease Chain A 183 425 - -
Vra5g2520 758 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 39 132 IPR035892 -
Vra5g2520 758 PANTHER PHOSPHOLIPASE D 5 758 IPR015679 -
Vra5g2520 758 PIRSF PLD_plant 2 758 IPR011402 GO:0004630|GO:0005509|GO:0016020|GO:0046470
Vra5g2520 758 SUPERFAMILY Phospholipase D/nuclease 147 432 - -
Vra5g2520 758 Pfam Phospholipase D C terminal 675 747 IPR024632 -
Vra5g2520 758 SMART pld_4 296 333 IPR001736 GO:0003824
Vra5g2520 758 SMART pld_4 603 630 IPR001736 GO:0003824
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2520 Vra-Chr5 32095088 32098397 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2520 26 758 Phospholipase D Gene Family (Wang group) AT1G55180 61.867 0.0 957
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2520 K01115 - gmx:100807431 1404.42
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2520 5 32095088 32098397 Vra5g2520 5 32095088 32098397 ECH
Vra5g2520 5 32095088 32098397 Vra9g0242 9 1770064 1774467 PCT