Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2517 ATGGACGCCGAAGCGGACTCAACTCAAAACCCTACTCCAAGACACAAATGTTCGGCATGCTATAAACAATTCAAGAAGAAAGAGCATCTAATTGAGCACATGAAAACCTCGAACCATTCCGTCCATCAGCCTGCGTGTGGAGTCTGTCAAAAGCACTGCAAATCTTTTGAGTCTCTAAGAGAACATCTTACTGGTCCTTTGCCAAAAGGAGTTTGTTCAAAGACTTTCTCTCAACGGGGCTGTCAACTTTGCTTGGTACTATTTGATAGTCCCGGGTCTCTCATTGCTCACAGAGAAACATGTTGCTTATCTGCCCCTACTCGTCTTGGAACTAAAGAACTGACCTATATAGATTCCCAATTTCACCGTCAAGATTCTTCTGATGAAAACCATGCTGGCAGGGGCCCTGGAGGAACAGTTGCAATAGACTGTGAAATGGTTGGTGGTGGAAGTGATGGTTCTCTGGAACTTTGTGCAAGAGTATGTTTGGTTGATGAAGATGAGAACTTAATCTTTCATACGTATGTAAAACCTCAATTGCCTGTTACTAATTACAGATATGATATAACTGGGTTGACAGAAGAACATCTCAGAAATGCCATGCCCCTTGGCGAAGTTAAAGAAAACGTATGCAAAATACTATACAATGGAGAAAACCTTGGCAAAATTCGACTAAATGGTGGAAAGGCCAGGCTTCTTGTGGGGCATGACTTAGCACACGATTTATATTGCTTGAATATGCATTATCCTGATCATATGCTAAGAGACACTGCAAAGTACCGTCCGTTGATGAAGACAAACTTGGTCAGCCATTCGCTCAAGTATCTCACCCGAACATATCTTGGTTATGATATCCAATCCGGCACTCATGACCCGTATGAAGATTGTGTTTCTGTGATGAGACTATACAAGAGAATACGAGCTCAAAAGCATCCAGAGGAAGAAGACCATGGAACATCGACTCCGAGTAACAGGATTGTTGGTGTGCCTGATTGCTGGAGATCCAAGGAACTTGACAACCTCACTCCAGATCAACTCTATGCCATGTCAAGATCGGATTACAAGTGTTGGTGCTTGGATTTGAGGCCAAAATTGCCAACCTGA 1104 0.4303 MDAEADSTQNPTPRHKCSACYKQFKKKEHLIEHMKTSNHSVHQPACGVCQKHCKSFESLREHLTGPLPKGVCSKTFSQRGCQLCLVLFDSPGSLIAHRETCCLSAPTRLGTKELTYIDSQFHRQDSSDENHAGRGPGGTVAIDCEMVGGGSDGSLELCARVCLVDEDENLIFHTYVKPQLPVTNYRYDITGLTEEHLRNAMPLGEVKENVCKILYNGENLGKIRLNGGKARLLVGHDLAHDLYCLNMHYPDHMLRDTAKYRPLMKTNLVSHSLKYLTRTYLGYDIQSGTHDPYEDCVSVMRLYKRIRAQKHPEEEDHGTSTPSNRIVGVPDCWRSKELDNLTPDQLYAMSRSDYKCWCLDLRPKLPT* 368
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2517 367 PANTHER RNA EXONUCLEASE REXO1 / RECO3 FAMILY MEMBER-RELATED 9 363 - -
Vra5g2517 367 Gene3D - 138 321 IPR036397 GO:0003676
Vra5g2517 367 CDD REX4_like 140 304 IPR037431 GO:0006364|GO:0008408
Vra5g2517 367 ProSitePatterns Zinc finger C2H2 type domain signature. 17 39 IPR013087 -
Vra5g2517 367 Gene3D Classic Zinc Finger 2 65 - -
Vra5g2517 367 ProSiteProfiles Zinc finger C2H2 type domain profile. 15 44 IPR013087 -
Vra5g2517 367 SMART exoiiiendus 138 312 IPR013520 -
Vra5g2517 367 PANTHER EXONUCLEASE FAMILY PROTEIN 9 363 - -
Vra5g2517 367 SUPERFAMILY Ribonuclease H-like 140 307 IPR012337 -
Vra5g2517 367 Pfam Exonuclease 140 303 IPR013520 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2517 Vra-Chr5 32079177 32083709 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2517 1 360 C2H2 Transcription Factor Family AT3G27970 53.056 1.03e-135 389
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2517 K18327 - gmx:100788682 649.047