Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2516 ATGAGTCGAGAACAGCAGAAGCGAGGGAAGCAAGAAATATGTTCTGATGGAGCTGAAAAGGTCATTGTTGCCGTTAAGGCATCAAAGGAAATTCCAAAGACTGCTCTTGTTTGGTCCCTGACTCATGTTGTGCATCCTGGCGATTGCATTACACTGCTAGTAGTTGTACCTTCACAGAGTTCGGGCAGAAGATTGTGGGGTTTTCCAAGATTTGCTGGTGATTGTGCCAGTGGTCATAAGAAATCTTCTTCAGGATCATCAAGTTCGGAACAGAAGTGTGATATCACTGACTCTTGCTCTCAAATGATCCTTCAGCTCCATGATGTCTATGATCCTAACAAGATAAATGTGAAGATTAAAATTGTTTCTGGATCACCATGTGGAGCAGTGGCTGCGGAAGCCAAGAAAGCCCAAGCCAATTGGGTCGTTTTAGACAAACAGCTCAAACATGAAGAAAAACAATGTATGGAAGAGCTGCAATGCAACATTGTGGTTATGAAGCGTTCACAACCTAAGGTACTCCGCTTGAATTTGGTTGGAACAAAAAAGAAGGATCTTGAAGAATTATGTTCACTACCTTCTGAACAAGATCAGAGGCTTGGAAAACAAACAAAGAACAAGAGTGATTCTTTAAATTCCTTAAAAGGTCCAGTTGTCACTCCATCCAGCAGCCCTGAGCTAGGGACACCATTTACTGCAACTGAAGCTGGTACTTCATCGGTTTCAAGCTCTGATCAAGGAACTTCACCATTTTTCATCTCTGAGATAAACAGTGAGTCCAAAAAAGAGGAAACTATAAAAGAAAATCCAGAACTTGATGATTCTATATCAGACACAGACAGTGAAAGCTTATCCACTTCTTCAGCAAGCTTGAGATTCCAGCCATGGATCACCGATTTACTTCTGCATCAACGATCTTCTCAACCTAAGGAAGAAAGAACAGAGAGATCTCACAGTAGGAATCAATTGTCTACTACTAGAGCTTTGCTAGAAAAGTTCTCGAGACTTGATAGAGAAGCTGAAATTGAAATCTCAACCTATAAGACTGACTTGGATTTCAGTGGGAATGTACGAGAAGCAATAGCGTTATCTAGAAATACTCCGCTTGGTCCACCTCCCTTGTGTTCAATCTGTCAACACAAGGCTCCTGTTTTTGGAAAACCTCCAAGATGGTTTACCTATGCTGAATTGGAGCTTGCCACTGGTGGATTTTCACAAGCCAATTTCTTGGCAGAAGGAGGATTTGGATCTGTTCACAGAGGTGTTCTACCAGATGGACAAGTTGTTGCTGTGAAGCAACATAAATTGGCCAGTTCTCAGGGTGACCTTGAATTCTGCTCGGAGGTAGAAGTCCTGAGCTGTGCTCAGCACCGAAATGTTGTTATGTTGATTGGTTTCTGTATAGAGGATAAGAGAAGGCTATTGGTTTATGAGTACATATGCAATGGATCATTGGATTCTCATTTATATGGGAGACAACGAAAACCATTAGAATGGTCTGCCCGGCAAAAAGTTGCTGTTGGAGCTGCCCGAGGGTTGCGATATCTTCATGAAGAGTGCAGAGTGGGTTGCATTATCCACCGTGACATGCGACCCAACAACATTCTTATCACTCATGATTTTGAACCTCTGGTTGGTGATTTTGGACTGGCGAGGTGGCAGCCTGATGGTGACACAGGAGTGGAAACTAGAGTAATCGGAACATTTGGGTATTTGGCTCCTGAATATGCTCAAAGCGGCCAAATTACTGAAAAGGCTGATGTTTATTCATTTGGTGTTGTATTAGTAGAGCTTGTTACAGGGCGAAAGGCTGTGGATCTGAATAGGCCAAAGGGACAGCAGTGTCTTACTGAGTGGGCACGACCACTGTTAGAAGAATATGCCATTGAGGAACTGATTGATCCAAGGTTGGGAAGCCACTATTCGGAACATGAGGTCTATTGCATGCTGCATGCTGCCTCATTGTGCATAAGGAGAGATCCTTATTCTAGACCTCGCATGTCACAGGTTTTGCGAATACTTGATGGTGACACGGTTATGGACCCAAATTATGTTTCAACTCCCAGTTATGATGTGGGAAACCGGAGTGGTTGA 2094 0.4312 MSREQQKRGKQEICSDGAEKVIVAVKASKEIPKTALVWSLTHVVHPGDCITLLVVVPSQSSGRRLWGFPRFAGDCASGHKKSSSGSSSSEQKCDITDSCSQMILQLHDVYDPNKINVKIKIVSGSPCGAVAAEAKKAQANWVVLDKQLKHEEKQCMEELQCNIVVMKRSQPKVLRLNLVGTKKKDLEELCSLPSEQDQRLGKQTKNKSDSLNSLKGPVVTPSSSPELGTPFTATEAGTSSVSSSDQGTSPFFISEINSESKKEETIKENPELDDSISDTDSESLSTSSASLRFQPWITDLLLHQRSSQPKEERTERSHSRNQLSTTRALLEKFSRLDREAEIEISTYKTDLDFSGNVREAIALSRNTPLGPPPLCSICQHKAPVFGKPPRWFTYAELELATGGFSQANFLAEGGFGSVHRGVLPDGQVVAVKQHKLASSQGDLEFCSEVEVLSCAQHRNVVMLIGFCIEDKRRLLVYEYICNGSLDSHLYGRQRKPLEWSARQKVAVGAARGLRYLHEECRVGCIIHRDMRPNNILITHDFEPLVGDFGLARWQPDGDTGVETRVIGTFGYLAPEYAQSGQITEKADVYSFGVVLVELVTGRKAVDLNRPKGQQCLTEWARPLLEEYAIEELIDPRLGSHYSEHEVYCMLHAASLCIRRDPYSRPRMSQVLRILDGDTVMDPNYVSTPSYDVGNRSG* 698
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2516 697 Gene3D Transferase(Phosphotransferase) domain 1 480 684 - -
Vra5g2516 697 PANTHER OS01G0253100 PROTEIN 16 695 IPR045271 GO:0004714|GO:0006468
Vra5g2516 697 SUPERFAMILY Protein kinase-like (PK-like) 388 683 IPR011009 -
Vra5g2516 697 ProSitePatterns Tyrosine protein kinases specific active-site signature. 525 537 IPR008266 GO:0004672|GO:0006468
Vra5g2516 697 Gene3D Phosphorylase Kinase; domain 1 376 479 - -
Vra5g2516 697 CDD STKc_IRAK 410 676 - -
Vra5g2516 697 Pfam Protein tyrosine and serine/threonine kinase 408 673 IPR001245 GO:0004672|GO:0006468
Vra5g2516 697 PANTHER KINASE WITH ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE DOMAIN-CONTAINING PROTEIN 16 695 - -
Vra5g2516 697 MobiDBLite consensus disorder prediction 257 274 - -
Vra5g2516 697 MobiDBLite consensus disorder prediction 194 288 - -
Vra5g2516 697 ProSiteProfiles Protein kinase domain profile. 404 680 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2516 697 MobiDBLite consensus disorder prediction 205 256 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2516 Vra-Chr5 32072302 32078653 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2516 384 680 Trihelix Transcription Factor Family AT1G70460 53.642 6.54e-103 328
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Vra5g2516 PK_Tyr_Ser-Thr 4.8e-41 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2516 - - gmx:100789216 1267.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2516 5 32072302 32078653 Vra5g2516 5 32072302 32078653 ECH
Vra5g2516 5 32072302 32078653 Vra9g0238 9 1745169 1751033 PCT