Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2508 ATGGCGACAGTGCCAGGACAATTGATCTGGGAGATCGTGAAGAAGAACAACTCTTTCTTGGTGAAAGAGTTCGGAAGGGGCACTCAGAGCGTGCAGTTCAGCAGAGAGCCCAACAATCTCTACAACCTCAACACTTTCAAGTACTCTGGTCTGGCGAACAAGAAAACCGTCACCATTCAGCCTGCTGGTAAAGACCAATCTGTAATACTGGCCACAACTAAAACAAGGAAACAAAATAAGCCAGCTTCATTGCTTCACAAGTCTGTCATGAAAAAGGAGTTCCGAAGAATGGCGAAGGCAGTGCAAAATCAGGTAGCGGATAACTACTACAGACCTGATCTGAAAAAGGCAGCTCTGGCAAGGTTGAGCGCTGTCAATAGGAGTCTGAAAGTTGCAAAGTCTGGAGTTAAGAAGAGAAACAGACAGGCTGTGAAGGTTGTTGGCAGGAAGTGA 453 0.4636 MATVPGQLIWEIVKKNNSFLVKEFGRGTQSVQFSREPNNLYNLNTFKYSGLANKKTVTIQPAGKDQSVILATTKTRKQNKPASLLHKSVMKKEFRRMAKAVQNQVADNYYRPDLKKAALARLSAVNRSLKVAKSGVKKRNRQAVKVVGRK* 151
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2508 150 PANTHER 60S RIBOSOMAL PROTEIN L28 1 150 IPR002672 GO:0003735|GO:0005840|GO:0006412
Vra5g2508 150 Gene3D - 6 133 - -
Vra5g2508 150 PANTHER 60S RIBOSOMAL PROTEIN L28-1-LIKE 1 150 - -
Vra5g2508 150 Pfam Ribosomal L28e protein family 8 128 IPR029004 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2508 Vra-Chr5 32025706 32027869 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2508 1 143 Cytoplasmic Ribosomal Protein Gene Family AT4G29410 73.427 1.93e-76 222
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2508 K02903 - gmx:100500189 281.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2508 5 32025706 32027869 Vra5g2508 5 32025706 32027869 ECH