Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2504 ATGGACGGTCTAAGTTGGGATTCTTCATCACAACTTGTTGGTAACATACCGATCTTGTGGAGCAGTCAGCCTCAGGACCTTGAAGGAGAGTATCATCATTCCATGCCACACCTTTGTTCGAATGTTCACAATCAAACATGTTATCCATATCACAGTTCTGAAAAAGCGAGGGAGATGGTTCATCCATCCACTTCTGAGATAACGAGTATCTTGCCAAATATGAATCTGTCACAAAGAACAGCAACCATGCCTGTGAAATCAGGAACAGTTGGAGCCAGTTGGGGAGAAGCTTTAACATCTCAATCATGCCCGTCCCTTTCGGTGAATATGAACCAAACTAGCAATTATGTAGCAGATTTCAACATGGCCCACCAGCAACAACACCTTATCAGCGGCACGCAAAACGTCAAGGCTACCTGCTCTCTCGAGTCACTTGATTGCTTGCTTTCAGCTACTAAGAATGGCAACACAGACACGTCTCTCGAAGATGATGGGATTTCCATGATGATTTTATCTGACTGCAGAAACTTATGTAACTTCAGTTATGGCAGCGCAGTCTCCTCTGGTGAATCTGAGAGCAATGCTTCCAATGCCAGAAACAGTGACATGAGGTATGCATCAGTGAATGAGCTGGATGAAACAGCGTCTCAAAGCTTCTCTGATCAATATATCAGTCAAGGAAGAGTTATAGATTCTGAAGTTATTTGCACAAAAGGGAGCAATTCATGCTTCAGCGTTGCTCAGAATTCTTTTGCCACCGAAGGTGGCTTCAGGCTTATCTCAGAGACTTCACCAAAGTCCAAGAGACCCAGATGGAACAGGCATCCTGGTTCATCAAATATCAACTTCCAGCAGCCAAATTCATCTGTGTCACCTTCCTTTGAAGAACCTGATCCAGAGGCCATAGCACAAATGAAGGAAATGATATATAGGGCTGCAGCTTTTAGGCCAGTGAACTTGGGATTGGAAGTGGTGGAAAAGCCTAAAAGGAAGAATGTTAGGATATCAACTGATCCACAAACTGTGGCTGCCAGGGAAAGAAGGGAGAGAATAAGTGAGAGGATTAGGGTTTTGCAGAAGATTGTGCCTGGTGGAAGCAAGATGGACACTGCATCAATGCTTGATGAAGCTGCAAACTACCTCAAGTTTCTCAGAGCACAAGTCAAAGCACTAGAAAATTTAGGTAACAAGCTTGACACAATGAATTGTCCTCCTAACATAGCCTTCTCTTTCAACTCTTCTTTTCCCGTACAAACACATTTCCCCGTCCAAAACCCTAGCGGCAACACCCACAACCAACAGTCCAAGGGTCGGAAATGA 1320 0.4424 MDGLSWDSSSQLVGNIPILWSSQPQDLEGEYHHSMPHLCSNVHNQTCYPYHSSEKAREMVHPSTSEITSILPNMNLSQRTATMPVKSGTVGASWGEALTSQSCPSLSVNMNQTSNYVADFNMAHQQQHLISGTQNVKATCSLESLDCLLSATKNGNTDTSLEDDGISMMILSDCRNLCNFSYGSAVSSGESESNASNARNSDMRYASVNELDETASQSFSDQYISQGRVIDSEVICTKGSNSCFSVAQNSFATEGGFRLISETSPKSKRPRWNRHPGSSNINFQQPNSSVSPSFEEPDPEAIAQMKEMIYRAAAFRPVNLGLEVVEKPKRKNVRISTDPQTVAARERRERISERIRVLQKIVPGGSKMDTASMLDEAANYLKFLRAQVKALENLGNKLDTMNCPPNIAFSFNSSFPVQTHFPVQNPSGNTHNQQSKGRK* 440
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2504 439 MobiDBLite consensus disorder prediction 262 296 - -
Vra5g2504 439 MobiDBLite consensus disorder prediction 274 294 - -
Vra5g2504 439 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 335 384 IPR011598 GO:0046983
Vra5g2504 439 Coils Coil 374 394 - -
Vra5g2504 439 Pfam Helix-loop-helix DNA-binding domain 345 384 IPR011598 GO:0046983
Vra5g2504 439 SMART finulus 341 390 IPR011598 GO:0046983
Vra5g2504 439 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 340 399 IPR036638 GO:0046983
Vra5g2504 439 PANTHER TRANSCRIPTION FACTOR BHLH87 1 434 - -
Vra5g2504 439 PANTHER TRANSCRIPTION FACTOR HEC3-RELATED 1 434 IPR045843 GO:0003700|GO:0006355
Vra5g2504 439 MobiDBLite consensus disorder prediction 420 439 - -
Vra5g2504 439 Gene3D - 340 403 IPR036638 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2504 Vra-Chr5 31999018 32001505 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2504 94 431 Basic Helix-Loop-Helix Transcription Factor Gene Family AT3G21330 47.472 6.26e-81 253
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Vra5g2504 HLH 3.1e-05 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2504 - - gmx:100793830 661.373
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2504 5 31999018 32001505 Vra5g2504 5 31999018 32001505 ECH