Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2502 ATGGGAACGTTGAGGTGTTTCCTTGTTGGTTTTGTTGGAGGTCTAGTTCTTGCCATTCTGGTTCAAGCTCAGGACCAATCAGGATTCATCAGCATAGATTGTGGAGCTACTGAAGATGTGACCTATACTGAGTCCACAACAGGCATAAATTATACTTCAGACGCAAATTTGATTAATACTGGTGTGAGTAAGTCAATAGAAACTGATCTCAAACAACGGTATCAGCGACAGATGTGGACTGTGAGAAGCTTCCCTGAAGGAAAAAGGAACTGCTACAAAATAAACATCACAAGAGGCTCTAAGTATCTGATCAGGGTTAGTTTTTTGTACGGAAATTATGATGATCTGGATAAGACTCCAGAGTTTGACATTCATCTGGGGGCTAACCTGTGGGGTACGGTGAGCATAAACAATGGATCAAATGAAGTGGACAAGGAGATCATACATGTACCTTCACTGGATTATTTACAGCTCTGTCTGGTTGACACAGGCCATGGAACACCGTTTATATCAGTCATAGAATTGAGAACTTTGCCAAATAATCTTTACGTCACTGAATCTGGATCATTGGAGTTTTTCGAGCGGTGGGATATAGGTTCAAACAGAGGCTACAGATACAAGAACGATGTTTATGATCGTTTTTGGAGATATGGCAACATAAATAATTGGACAGAATTAAATGTTTCGATTTCTGCTGATGCTTTAGACCAGAACGTGTACAAACCGCCAGCTATTGTGATGAGCACTGCAGCTACACCATCAAATGTCAGTGCTCCATTGGTAATAAGATGGAAGCCAGCTGATCCAACTGAACAATTCTATGTTTACTTGCACTTCATGGAGATTCAAGAGTTGGCGACGAATGAGACAAGAGAATTCAACATCTTGGAAAATGGTAAACTGAGGTTTTCAAAGTTTTCACCAAGGAATCTTCTTGTCAACACTTTATATAGCTCTTCACCCTCCAGTGGGAAAGAAATTATATATTCTCTTGAAAAAACCGAAAACTCAACTCTGCCTCCCATCATCAATGCCCTTGAAATTTACAGCGTAATAGATTTCCCGCAATCAGATACGTTCAAAGGAGACGATGATGCCATTACAACCATCAAATCAGTTTATGGGGTGACAAGAAATTGGCAAGGTGATCCATGTGCCCCTGTAGATTACTTGTGGGATGGTTTGAATTGTAGTTATAGCAAAAACGAGTCTCCAAGAATCACAACTTTGAATTTATCTTCAAGTGGGTTGTCAGGAAAGATAGACCCTTCAATTTCAAACCTCAGCATGTTGGAGAAGTTGGATTTATCAAACAATAGCTTAAATGGTGAAATCCCTGAAGTTCTGTCTCAATTACAACACTTAAAGATATTAAACTTGAAGAACAATAACCTCTCTGGTTTAATTCCCTCGGCACTTGTTGAGAAATCTAAGGGAGGTTCTTTGTCATTAAGTGTGGACCAAAATCTCTGTGAATCTATTCAATGCAACGAGCAGGACAAAGAGGGTGGAAAGAAAAAGAGCAATGTTACACCCATAGTAGCATCAGTTAGTGGGGTTGTGATCCTTCTCGTTGTGGTGACAGCTATATTATGGACTCTTAAAAGGAGAAAAATGAAAGCTTTGATAGTAGAAAAGGATCAAAGTCAGATCTCACCACAAAACACAGAACAAGATGATTTATTACTACCATTCAGAAAACAAATTTATTCGTACTCCGACATCCTTAAAATCACCAACAATTTCAATACAACTCTCGGTAGAGGAGGTTTTGGAACTGTTTATCTTGGTCATATCGATGACACTCCAGTTGCAGTGAAAATCCTTTCCTCATTGTCTGCCCGGGGCTTTCAACAATTTCAGGCAGAGGTTAAACTTCTAATGAGAGTTCATCACAAAAATTTAACCTCCCTTGTTGGTTATTGTAACGAAGAAAGCACTAAGGGTCTCATATATGAGTACATGGCTAATGGAAACTTACAAGAACATCTCTCTGGCAATCACAGCAAAGCAAAACTCTTCACCTGGGAAGAAAGACTTCGTCTAGCAGTGGATGCAGCATTAGGTTTGGATTATCTGCAAAATGGTTGCAAGCCACCTATAATCCACAGAGACATAAAATCTACAAACATCTTATTGAATGAACACTTCCAAGCAAAGCTAGCCGATTTTGGTCTCTCCAAAATTATTCCAACTGATGGGGGAACTCACGTGTCAACTGTTGTTGCTGGTACTCCTGGTTATCTGGACCCTGAGTACTTCATAACACACAGATTGACAGATAAGAGTGATGTTTATAGTTTTGGTGTTGTTCTTTTGGAGATAATCACAAATCAAGCAGTGGTAATGAGGGATGGTGAAGAAAGTATTCACATAAGTGACTGGGTTAGATCCTTGGTTGTGAAAGGGGATATCGAGGCCATTGTTGACTCAAGGCTAGAAGGAGATTATGATACCAATTCAGTTTGGAAAGCCGTAGAAGTAGCAACAGCATGTGTGTCTCCAAATATGAACAAAAGGCCTATCACAAGTGTGATAGTGATTGAACTGAAAGAGTCTTTGTCAATGGAAGTAGCTCGAACAAAAGATAGAAGTAAGTATTCAACAGATTCAGGGGTGACCTTGAATCTGAATACAGAATTTATTCCTCATGCCAGGTAA 2661 0.3957 MGTLRCFLVGFVGGLVLAILVQAQDQSGFISIDCGATEDVTYTESTTGINYTSDANLINTGVSKSIETDLKQRYQRQMWTVRSFPEGKRNCYKINITRGSKYLIRVSFLYGNYDDLDKTPEFDIHLGANLWGTVSINNGSNEVDKEIIHVPSLDYLQLCLVDTGHGTPFISVIELRTLPNNLYVTESGSLEFFERWDIGSNRGYRYKNDVYDRFWRYGNINNWTELNVSISADALDQNVYKPPAIVMSTAATPSNVSAPLVIRWKPADPTEQFYVYLHFMEIQELATNETREFNILENGKLRFSKFSPRNLLVNTLYSSSPSSGKEIIYSLEKTENSTLPPIINALEIYSVIDFPQSDTFKGDDDAITTIKSVYGVTRNWQGDPCAPVDYLWDGLNCSYSKNESPRITTLNLSSSGLSGKIDPSISNLSMLEKLDLSNNSLNGEIPEVLSQLQHLKILNLKNNNLSGLIPSALVEKSKGGSLSLSVDQNLCESIQCNEQDKEGGKKKSNVTPIVASVSGVVILLVVVTAILWTLKRRKMKALIVEKDQSQISPQNTEQDDLLLPFRKQIYSYSDILKITNNFNTTLGRGGFGTVYLGHIDDTPVAVKILSSLSARGFQQFQAEVKLLMRVHHKNLTSLVGYCNEESTKGLIYEYMANGNLQEHLSGNHSKAKLFTWEERLRLAVDAALGLDYLQNGCKPPIIHRDIKSTNILLNEHFQAKLADFGLSKIIPTDGGTHVSTVVAGTPGYLDPEYFITHRLTDKSDVYSFGVVLLEIITNQAVVMRDGEESIHISDWVRSLVVKGDIEAIVDSRLEGDYDTNSVWKAVEVATACVSPNMNKRPITSVIVIELKESLSMEVARTKDRSKYSTDSGVTLNLNTEFIPHAR* 887
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2502 886 CDD STKc_IRAK 586 852 - -
Vra5g2502 886 SMART serkin_6 580 824 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2502 886 Gene3D - 504 541 - -
Vra5g2502 886 Pfam Protein tyrosine and serine/threonine kinase 582 782 IPR001245 GO:0004672|GO:0006468
Vra5g2502 886 PANTHER OS07G0107800 PROTEIN-RELATED 16 885 - -
Vra5g2502 886 Pfam Malectin-like domain 32 351 IPR024788 -
Vra5g2502 886 Gene3D Transferase(Phosphotransferase) domain 1 655 874 - -
Vra5g2502 886 SUPERFAMILY L domain-like 390 475 - -
Vra5g2502 886 SUPERFAMILY Protein kinase-like (PK-like) 560 844 IPR011009 -
Vra5g2502 886 ProSitePatterns Serine/Threonine protein kinases active-site signature. 701 713 IPR008271 GO:0004672|GO:0006468
Vra5g2502 886 Gene3D Ribonuclease Inhibitor 366 483 IPR032675 -
Vra5g2502 886 ProSitePatterns Protein kinases ATP-binding region signature. 586 607 IPR017441 GO:0005524
Vra5g2502 886 PANTHER PUTATIVE-RELATED 16 885 - -
Vra5g2502 886 ProSiteProfiles Protein kinase domain profile. 580 854 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2502 886 Gene3D Phosphorylase Kinase; domain 1 564 654 - -
Vra5g2502 886 Pfam Leucine Rich Repeat 431 450 IPR001611 GO:0005515
Vra5g2502 886 Pfam Leucine Rich Repeat 454 473 IPR001611 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2502 Vra-Chr5 31985006 31989904 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2502 1 886 Receptor kinase-like Gene Family AT1G51800 48.058 0.0 853
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra5g2502 Malectin_like 2.5e-115 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2502 - - gmx:100785345 1282.7