Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2501 ATGGGAATGTCATCGAGTTTCCTAGTTACTTTTGTAGGAGTTCTAGTTCTTGTCATTCTCATTCAAGCTAAGGGCCAACCAGGATTCATCAGCATAGATTGCGGAGCTCAAGCAGGTGTCAACTATACTGAGCCTTCACTAGACATAAATTACGTTTCGGATGCAGATTTCATAAATACTGGTGTGAGTGGGACAATATCATCTGAAGATATCAAAAGACACAGTCAACGACAACTGTGGAGGCTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAGCGTCACAGGAGGCTCTAGGTATCTCATACGCACTACTTTTCTGTACGGAAATTATGATGGCCGAAATATGTTACCACAGTTTGATCTTCTTCTCGGACCTAACCACTGGGCTACAGTCACTATATTCAATGCATCAATGGACCAATCCAATGAGATCATTCATATACCTTCACTGGATTTCGTACAAATCTGTCTAGTGAACACAGGCAATGGCACACCATTTATAACAACCATAGAATTGAGGACTTTGAAAAATGATACATACGTTACTCAATCCGGATCACTGCAAATTTACAATGACCTACGTTGCGATTTGGGTTCAGACAGAGGCTACAGATACTGGTCTGATGTTTATGATCGTTTCTGGTATGGTCGTGAGTGGGACGCCTGTAACTTCGGCGAAAATTGGAAACCACTAAATGCCTCCATTCCCGATGATTCTTTAAATGAGAATGATTACAAGCCGGGTGCAACTATCATGAGCACCGCAGTTGAACCACAAAATGATAGTGCTCCGTTGGTAATAAGCTGGGAGCCACAACATGAAACTGACGAATTCTATGTGTACATGCACTTCACGGAAATTCAAGTGTTAACCACCAATCAGACAAGACAATTCAACTTCATGTTGAACGATGAATCATGGTATGAAAATTTTTCTCCACGCTACCATGGTATGAATACTATATATACGACGTCAGCCATCAGTGGGAAAGAACTTAAATTTTCACTGGAGAGGACTGAAAATTCAACCCTCCCTCCCATCATAAGTGCCATTGAAATTTACAGAGTAATAGAATTACAGGAACCAGAAACATTCCAAGGAGATGTTGATGCGATTACTACCATCAAGTCAGTTTATGCGCTAGCAAGAGATTGGCAAGGCGATCCCTGCGCCCCTTTAGCCTATTTGTGGGATGGTCTCAATTGTTCTTATCACACAAATGATTCTCCAAGAATCACAACTTTGAATTTATCTTCCAGTGGATTACATGGAAAGATTCATCCTTCAATTTCAAATCTCGCCATGCTGGAGAAATTGGATTTATCAAACAATAGCTTAAACGGTGAAATTCCTGATTTTCTGTCACAACTGCCACACTTGAAGATCTTAAACTTAGAGAAGAATAACCTCTCCGGTTTAATTCCCTCAGCACTTCATAGAGATTCCCTCTCACTAAGTGTGGACAATAATCCAAATCTATGTGAACCTGATCAATGCAACAAGAATAAACACAAGAAAAACAATAGCATTGTTACACCCTTGGTAGCATCTGTTGGCGGGGTTTTGATTCTTCTGGTAGCAGTGGCAGCTATATTGTGGACAACTAAAAGGAGAAGAATTAAAGATAAAAATACTTCGACGGTAGAAAAGGATCAGAGTGAGAAATCACCACAATACACTGAACAAAATGATTCATCACTGCAATCCCAAAAACAGATATATACATACTCTGACATCCTTAAAATCACCAACAATTTCACTACAGTTGTTGGTAAAGGAGGATTTGGAACAGTTTATCTGGGCTATATAGAAGACACTCCAGTTGCAGTGAAAATTCTTTCCCCATCTTCTGTTCGTGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTTATGAGAGTTCATCACAAAAATTTGACCTCCCTTGTTGGTTACTGTAATGAAGGAACCAATAAGGGTCTCATATACGAGTACATGGCTAATGGAAACTTACAAGAGCATCTCTCTGGTAAACGAAGAAAAAGAAATTTCTTTAGCTGGGAAAAGAGACTTCGTATAGCAGTGGATGCAGCCTCAGGATTGGAGTATCTGCAAAATGGTTGTAAGCCANCAATATTCCACAGAGACATAAAATCAACAAACATCTTGTTGAATGAACACCTCCAAGCAAAATTATCTGATTTTGGTCTNTCCAAAATTATCCTAACAGATGGGGAAACTCATGTGTCAACTGTTATTGCTGGTACTCCTGGTTATCTAGACCCTGAATACTATCTAACGAATAGATTAACAGAGAAGAGCGACGTTTATAGCTTTGGTGTTGTGCTTTTAGAGATAATCACAAGTCAACCAGTGATAGGGAAGAATGAAGAAAAAACCCACATAAGTGAATGGGTTAGGTCCTTGATCGCAAAAGGTGATATCAATGCCATTGTGGACTCAAGGTTGGAAGGAGAGTTTGACAGTAACTCAGTTTGGAAAGCTGTAGAAATAGCAACGGCATGTGTTTCTCCAAATCCCAACAGAAGGCCAAGGATAAATGTGGTGGTGAATGAACTGAAAGAGTCTTTATCAATGGAATTAGCTCGAACTGAAGATAGAAGTACTCAAACAAGTGATTCAATTAACCAGGTCATCATGAATCTCAATACAGAATCTCTTCCCCAGGCCAGGTAA 2688 0.3969 MGMSSSFLVTFVGVLVLVILIQAKGQPGFISIDCGAQAGVNYTEPSLDINYVSDADFINTGVSGTISSEDIKRHSQRQLWRLRSFPEGKRNCYKISVTGGSRYLIRTTFLYGNYDGRNMLPQFDLLLGPNHWATVTIFNASMDQSNEIIHIPSLDFVQICLVNTGNGTPFITTIELRTLKNDTYVTQSGSLQIYNDLRCDLGSDRGYRYWSDVYDRFWYGREWDACNFGENWKPLNASIPDDSLNENDYKPGATIMSTAVEPQNDSAPLVISWEPQHETDEFYVYMHFTEIQVLTTNQTRQFNFMLNDESWYENFSPRYHGMNTIYTTSAISGKELKFSLERTENSTLPPIISAIEIYRVIELQEPETFQGDVDAITTIKSVYALARDWQGDPCAPLAYLWDGLNCSYHTNDSPRITTLNLSSSGLHGKIHPSISNLAMLEKLDLSNNSLNGEIPDFLSQLPHLKILNLEKNNLSGLIPSALHRDSLSLSVDNNPNLCEPDQCNKNKHKKNNSIVTPLVASVGGVLILLVAVAAILWTTKRRRIKDKNTSTVEKDQSEKSPQYTEQNDSSLQSQKQIYTYSDILKITNNFTTVVGKGGFGTVYLGYIEDTPVAVKILSPSSVRGYQQFQAEVKLLMRVHHKNLTSLVGYCNEGTNKGLIYEYMANGNLQEHLSGKRRKRNFFSWEKRLRIAVDAASGLEYLQNGCKPXIFHRDIKSTNILLNEHLQAKLSDFGLSKIILTDGETHVSTVIAGTPGYLDPEYYLTNRLTEKSDVYSFGVVLLEIITSQPVIGKNEEKTHISEWVRSLIAKGDINAIVDSRLEGEFDSNSVWKAVEIATACVSPNPNRRPRINVVVNELKESLSMELARTEDRSTQTSDSINQVIMNLNTESLPQAR* 896
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2501 895 Gene3D Transferase(Phosphotransferase) domain 1 663 885 - -
Vra5g2501 895 CDD STKc_IRAK 594 859 - -
Vra5g2501 895 Gene3D Ribonuclease Inhibitor 374 500 IPR032675 -
Vra5g2501 895 SUPERFAMILY L domain-like 401 483 - -
Vra5g2501 895 Gene3D Phosphorylase Kinase; domain 1 569 662 - -
Vra5g2501 895 Pfam Malectin-like domain 32 360 IPR024788 -
Vra5g2501 895 Pfam Protein tyrosine and serine/threonine kinase 591 857 IPR001245 GO:0004672|GO:0006468
Vra5g2501 895 SMART serkin_6 588 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2501 895 PANTHER PUTATIVE-RELATED 15 895 - -
Vra5g2501 895 ProSiteProfiles Protein kinase domain profile. 588 861 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2501 895 ProSitePatterns Serine/Threonine protein kinases active-site signature. 709 721 IPR008271 GO:0004672|GO:0006468
Vra5g2501 895 ProSiteProfiles Leucine-rich repeat profile. 439 461 IPR001611 GO:0005515
Vra5g2501 895 ProSitePatterns Protein kinases ATP-binding region signature. 594 615 IPR017441 GO:0005524
Vra5g2501 895 SUPERFAMILY Protein kinase-like (PK-like) 566 857 IPR011009 -
Vra5g2501 895 PANTHER OS07G0107800 PROTEIN-RELATED 15 895 - -
Vra5g2501 895 MobiDBLite consensus disorder prediction 548 568 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2501 Vra-Chr5 31974815 31979665 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2501 1 895 Receptor kinase-like Gene Family AT1G51800 48.299 0.0 840
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra5g2501 Malectin_like 2.2e-109 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2501 - - pvu:PHAVU_005G162300g 1322.38
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2501 5 31974815 31979665 Vra5g2501 5 31974815 31979665 ECH