Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2498 ATGAGCTGGGAAAAGAGACTTCGTATAGCAGTGGATGCAGCCTCAGGATTGGAGTATCTGCAAAATGGTTGTAAGCCACCAATATTCCACAGAGACGTAAAATCTACAAACATCTTGTTGAATGAACACCTCCAAGCAAAATTATCTGATTTTGGTCTATCGAAAATTATCCAAACAGATGGGGAAACTCATGTGTCAACTGTTATTGCTGGTACTCCTGGTTATCTAGACCCTGAATACTACCTAACCAATAGATTAACAGAGAAGAGCGACGTTTATAGCTTTGGTGTTGTGCTTTTAGAGATAATTACAAGTCAACCAGTGATAGCGAAGAATCAAGAAAAAACCCACATAAGTGAATGGGTTAGGTCCTTGATTGCAAAAGGTGATATCAATGCCATTGTTGATTCAAGGTTGGAAGGAGAGTTTGACAGTAACTCAGTTTGGAAAGCTGTAGAAAAAGCAATGGAATGTGTATCTCCAAATCCCAACAGAAGGCCAAATATAAGTGTGGTGGTGAATGAACTGAAGGAGTCTTTAGCAATGGAATTAGCTCGAACTGAAGATAGAAGTACTCATACAAGTGATTCAGTTAACCAGTTCATCATGAATCTGAATACAGAATCTCTTCCCCAGGCCAGGTAA 645 0.3938 MSWEKRLRIAVDAASGLEYLQNGCKPPIFHRDVKSTNILLNEHLQAKLSDFGLSKIIQTDGETHVSTVIAGTPGYLDPEYYLTNRLTEKSDVYSFGVVLLEIITSQPVIAKNQEKTHISEWVRSLIAKGDINAIVDSRLEGEFDSNSVWKAVEKAMECVSPNPNRRPNISVVVNELKESLAMELARTEDRSTHTSDSVNQFIMNLNTESLPQAR* 215
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2498 214 PANTHER OS07G0107800 PROTEIN-RELATED 2 214 - -
Vra5g2498 214 ProSitePatterns Serine/Threonine protein kinases active-site signature. 28 40 IPR008271 GO:0004672|GO:0006468
Vra5g2498 214 ProSiteProfiles Protein kinase domain profile. 1 180 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2498 214 Gene3D Transferase(Phosphotransferase) domain 1 1 203 - -
Vra5g2498 214 Pfam Protein kinase domain 9 174 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2498 214 SUPERFAMILY Protein kinase-like (PK-like) 1 176 IPR011009 -
Vra5g2498 214 SMART serkin_6 3 182 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2498 214 PANTHER LEUCINE-RICH REPEAT PROTEIN KINASE FAMILY PROTEIN 2 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2498 Vra-Chr5 31938102 31939201 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2498 1 214 Receptor kinase-like Gene Family AT1G51800 59.722 2.45e-88 276
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra5g2498 Pkinase 8.7e-26 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2498 - - vra:106760605 425.246