Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2497 ATGTCGATGAGTTTCTTCGCTGTTTTCCTTGGTGCTCTGCTTGTTCAAGCCCAGGATCAATCAGGATTTATCAGCATAGATTGCGGAGCTCCATCAGACACGGACTACACTGAGCCAAAAACAGGCATAAATTACACATCAGATGCCAATTTCATAGACACGGGTGAAAGTGGGACAATAATACCTGAAACCATCAACACTGTCTACCAACGACAGATGATGAATGTTAGAAGCTTCCCGAAAGGAAAAAGGAACTGCTACAAAATAAGCATCACTAAAGGTTCCACTTATCTCATCCGCACCAATTTTTTATACGGAAATTATGATAAGCTAAATAAGGCACCAAAGTTTGATATTCATCTCGGGGTTAACCACTGGTACACAGTGACTATAGACAATGCATCCACTCCCCAAGTCAATGAGATCATATATATACCTTCACTGGCTTATCTGCATATCTGTCTGGTTAACACAGGCCATGGCACACCCTTTATATCAGCTATAGAATTGAGGACTTTGAAAAATGGTACTTACGTCCCTGAATATGGATCATTGGAATATTACAAGCGGTGGGATTTAGGTTCAAACGATGGCTACAGGTACAATGTTGATGTTTATGATCGTTTCTGGTATAACTATGGGGACAACAAGGATTGGAAACAAATAAATGCTTCCATTGCTGCTGGTTCTTTTGATCAGAATGATTACGAACCGCCAGGAATTGTTCTGAGCACCGCAGTTACACCAGTAAATGCTAGTGCCCCATTGGTAATAAGCTGGGAGCCACAGAATCCAACTGAACAATACTATGTTTACATGCACTTCTTCGAGATTGAAGTGCTAGGGAAGAATCAGACAAGAGAATTCAATATCACCCAGAATGGAAGGCCATGGTATCAAAATTTGTCTCCGTTACCCCGGAGTATGAACACTATATATAGCAAATCAGGCATCAGTGGGGAAAAAATTGAATATTCGCTTGAGAAAGCCAAGAGTTCAAGCCTTCCTCCCATCATAAATGCCATTGAAATTTACAGAGTGATAAACTTCCAGCAGAAAGATACACACCAAGGAGATGTTGATGCGATTGCGAGCATCAAGTCGGCTTACGAAGTCAAAAGAGATTGGCAAGGTGATCCATGCGCCCCTGTAGCCTACTTGTGGGATGGTCTCAATTGTAGTTATCTCGGCAGTAAGAACCCAAGAATCACAACTTTGAATTTATCTTCAAGTGAATTGTCAGGAAGAATAGATCCTACGATTTCAAATCTCGTCATGTTGGAGCAGTTGGATTTATCCAACAATAACTTACACGGCGAAGTTCCTGATTTTCTATGTAGACTACAACATTTGAAGATGATAAATTTTGAGAACAACAACCTCACAGGTTCAATTCCCGAGGCACTAGTTCAAAAATCTAAGGAAGGTTTCCTATCACTAAGGGTGGGCCAAAATCCATATCTATGTGAATCCGGTCAATGCAAGGAGAAGAGGAAGGAAAAGAAGAATATTGTTACTCCCTTATTAGCATCCGTTTGTGGGGTTTTGATCATTCTTATGACTGTGGTAGTTGTATTGTGGACTCTTGAAAGGAGAAAACCCAAAGCTTCGACCATAGATCAACGTGAGATAGCACCGGAAAGCACAGAACAAGAGGATTCATTACATCAACTAAAAAAACAGATATATTCATACTCCGATGTAGTTAGAATCACCAACAAATTCAGTACAGTTGTTGGTAAAGGTGGGTTTGGAACAGTTTATCTGGGTTATATTGATGACACTCCCGTGGCAGTGAAAATGCTGTCTCCATCTTCAGTTCATGGTTATCGACAATTTCAAGCAGAAGTTAAAATTCTAATGAGGGTTCATCATACGAATCTCACCTCCCTCGTTGGATATTGTAATGACGGAGATTATAAGTGTCTCATATATGAGTACATGGCTAACGGAGACTTACAACAACATCTTTCTGGTAAACACAACAAATCAAAATTGTTGAGCTGGGAAGACAGACTTCGTATAGCAGTGGATGCAGCACTAGGTGAGGAAGTAAACTTGAAATTATGTGTTTTGTGAACACCCATTTTCCCCTCTCAAAATGTTTGCAATAAATCTAATATCGGGTTGGAGTATCTTCAAACTGGTTGCAAGCCTCCTATAATCCACAGAGACATAAAATCTACAAACATCTTGTTGGATGAAAAGTTCCAAGCAAAATTATCAGATTTTGGTCTATCCAAAATTATACCAATTGATGGGGGAACTCATGTGTCAACTGTTGTTGCTGGTACTCCTGGTTATCTAGATCCAGAGTACTACATATCCAATAGATTAACACAGAAAAGTGATGTTTATAGCTTTGGAGTTGTTCTTTTGGAAATCATCACTTATCAACCAGTAATAGTAATATCAAGGAATGAAGAAAGGGTTCACATCATTGAATGGGTCAGATCACTGATTGAAAAAGGGGATATCAAGGCGATTGTTGACTCAAGGTTAGAAGGAGATTTTGACATTAATTCAGCTTGGAAAGCCGTAGAAATAGCAATGGCATGTGTTTCCTTTAATCCCAGTGAAAGGCCAATGCTGAGGATGATAGTGACTGAACTAAGGGAGACTTTAGCAATCGAATTAGCTCGAGCAAAACTCATTGATGCACATCTAACAACAGATTCTATTGAACCGCTCGCCATAAATCTGGACACTGAATTCACTCCTCTGGCGAGGTAA 2733 0.3985 MSMSFFAVFLGALLVQAQDQSGFISIDCGAPSDTDYTEPKTGINYTSDANFIDTGESGTIIPETINTVYQRQMMNVRSFPKGKRNCYKISITKGSTYLIRTNFLYGNYDKLNKAPKFDIHLGVNHWYTVTIDNASTPQVNEIIYIPSLAYLHICLVNTGHGTPFISAIELRTLKNGTYVPEYGSLEYYKRWDLGSNDGYRYNVDVYDRFWYNYGDNKDWKQINASIAAGSFDQNDYEPPGIVLSTAVTPVNASAPLVISWEPQNPTEQYYVYMHFFEIEVLGKNQTREFNITQNGRPWYQNLSPLPRSMNTIYSKSGISGEKIEYSLEKAKSSSLPPIINAIEIYRVINFQQKDTHQGDVDAIASIKSAYEVKRDWQGDPCAPVAYLWDGLNCSYLGSKNPRITTLNLSSSELSGRIDPTISNLVMLEQLDLSNNNLHGEVPDFLCRLQHLKMINFENNNLTGSIPEALVQKSKEGFLSLRVGQNPYLCESGQCKEKRKEKKNIVTPLLASVCGVLIILMTVVVVLWTLERRKPKASTIDQREIAPESTEQEDSLHQLKKQIYSYSDVVRITNKFSTVVGKGGFGTVYLGYIDDTPVAVKMLSPSSVHGYRQFQAEVKILMRVHHTNLTSLVGYCNDGDYKCLIYEYMANGDLQQHLSGKHNKSKLLSWEDRLRIAVDAALGEEVNLKLCVL*TPIFPSQNVCNKSNIGLEYLQTGCKPPIIHRDIKSTNILLDEKFQAKLSDFGLSKIIPIDGGTHVSTVVAGTPGYLDPEYYISNRLTQKSDVYSFGVVLLEIITYQPVIVISRNEERVHIIEWVRSLIEKGDIKAIVDSRLEGDFDINSAWKAVEIAMACVSFNPSERPMLRMIVTELRETLAIELARAKLIDAHLTTDSIEPLAINLDTEFTPLAR* 911
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2497 909 Pfam Malectin-like domain 26 347 IPR024788 -
Vra5g2497 909 PANTHER PUTATIVE-RELATED 11 690 - -
Vra5g2497 909 ProSitePatterns Protein kinases ATP-binding region signature. 579 600 IPR017441 GO:0005524
Vra5g2497 909 Gene3D - 189 348 - -
Vra5g2497 909 CDD STKc_IRAK 579 870 - -
Vra5g2497 909 ProSiteProfiles Protein kinase domain profile. 573 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2497 909 SUPERFAMILY L domain-like 350 470 - -
Vra5g2497 909 Pfam Protein tyrosine and serine/threonine kinase 575 870 IPR001245 GO:0004672|GO:0006468
Vra5g2497 909 SMART serkin_6 573 874 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2497 909 PANTHER OS07G0107800 PROTEIN-RELATED 11 690 - -
Vra5g2497 909 PANTHER OS07G0107800 PROTEIN-RELATED 706 909 - -
Vra5g2497 909 Gene3D Ribonuclease Inhibitor 360 477 IPR032675 -
Vra5g2497 909 PANTHER PUTATIVE-RELATED 706 909 - -
Vra5g2497 909 SUPERFAMILY Protein kinase-like (PK-like) 553 867 IPR011009 -
Vra5g2497 909 ProSitePatterns Serine/Threonine protein kinases active-site signature. 720 732 IPR008271 GO:0004672|GO:0006468
Vra5g2497 909 Gene3D Phosphorylase Kinase; domain 1 556 647 - -
Vra5g2497 909 Gene3D Transferase(Phosphotransferase) domain 1 648 884 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2497 Vra-Chr5 31931537 31936113 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2497 3 909 Receptor kinase-like Gene Family AT1G51800 46.652 0.0 811
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra5g2497 Malectin_like 1.1e-113 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2497 - - gmx:100795183 1435.24
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2497 5 31931537 31936113 Vra5g2497 5 31931537 31936113 ECH