Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2494 ATGTGGATGAGTTTCTACTTTGCTGTTTTAGCTGTTCTACTTATTCAAACTCATGCTCAACCAGGATTCATCAGCATAGATTGCGGAGCTCAAGCAGGTGTCAACTATACTGATTCAACATATGGCATAAATTACGTTTCGGATGCAGATTTCATAAATACCGGTGTGAGTCAGACAATAGCATCTGAAGAGATCAGCAGAGAAAGTCGACGACAACTGTGGAGGCTGAGAAGCTTCCCGGAAGGAAAAAGGAACTGCTACAAAATAAACGTCACAAGAGGCTCTAAGTATTTCATCCGCACTACTTTTCTGTACGGAAATTATGATGGCCGAAATATGTTACCAGAGTTTGATCTTCTTCTCGGACCTAACCGCTGGGATACAGTCACTATATACAATGCAACCAGCATCAGACACAAGGAGATCGTACATGTAACTTCAATGGATTATGTGCAAATCTGTCTGGTTGACACAGGCAATGGCACACCATTTATAACAGCCATAGAATTCAGGACTTTGAATAATGATGCATACGTCACTCAATTCGGATCACTGGAACTTTACAATTACCTGCGCTGCGATTTGGGTTCAAACACAATCAACAGGTACCCCGTTGATGTTTATGATCGTTACTGGTATAGTCGTTCTTCCTGGAACGACTGTAACTTTGGCGAAAATTGGAAACCACTAAATGCCTCCATTCCCGATGATTCTTTAAATGAGAATGATTACAAGCCGGGAGCAACTATCATGAGCACCGCAGTTGAACCACAAAATGATAGTGCTCCGTTGGTAATAAGCTGGAAGCCACAACTTGAAACTGATGAATTCTATGTGTACATGCACTTCACGGAAATTCAAGTGTTAACCACCAATCAGACAAGACATTTCAACTTCATGCTGAACGATGAATCATGGTATGAAAATTTTTCTCCCCGCTACCATGGTATGAATACTATATATTCGACGTTAGCCATCAGTGGGAAAGAAATTAAATTTTCCCTCGAGAGGACTGAAAATTCAACCCTCCCTCCCATCATCAGTGCCATTGAAATTTACAGAGTAATAGACTTACAGAAACCAGAAACACTCCAAGGAGATGTTGAAGCGATTACAAGAATCAAGTCAGTTTATGGAGTGAAAAGGGATTGGGAAGGTGATCCATGCGCCCCTGCAGCCTACCTGTGGGATGGTCTCAACTGTACTTATCTCGGCAATGAGTTTCCAAGAATCACAGCTGTGAATTTATCGTCAAGTGGATTGTCAGGAAAGATTGACCCTTCCATCTCAAACCTCACCATGTTGGAGAAGCTGGATTTATCTAACAATAGCTTAAATGGTGAAGTTCCTGATTTTCTGTCTCAATTACAACACTTGAAGATCTTAAACTTGGAGAAGAATGACCTCTCCGGTTCAATTCCCTCTGCACTTGTTGAAAAATCACGCCAAGGTTCTCTCTCACTAAGTGTGGGTCAAAATCCATATCTATGTGAATCTGGTCAATGCAACGAGAAGGAAAAGAAAAATACTGTCATACCCATAGTAGCATCAATATGTGGGGTTCTAATTCTTCTAATAGCCGTTGCTATATTGTGGATCCTTAAAAGTCAAAAATCAAAAGTTGAAAAATTTACAGATTCGGTGGCAGTAAATCATCAGAGTGAGATTTCACAGCAATTCACAGAAAAGGATAATTCGTTCCAGCAACGCAAAAGTCAAATGTATTCATACTATGATGTCCTTCAAATCACTAACAATTTCAAAAGAATTATTGGTAAAGGAGGATTTGGAACAGTTTACCTGGGCTTTATCGATGACACTCCAGTTGCAGTGAAAATGCTTTCCCCATCAGCAGTTCATGGTTATCAACAATTTCAAGCAGAGGTTAAACTTCTACTCAGAGTTCATCACAAAAATTTGACATCCCTTATTGGTTACTGTAACGAAGGAACCAATAAGGGTCTCATATATGAGTACATGGCTAAAGGGAACTTACGAGAACATCTCTCAGGTAAACACAGAGAATCACCATTCTTGAGCTGGAAGGACAGACTTGGTGTTGCACTGGATGCAGCCTTAGGATTGGAATATCTGCAAAATGGTTGCAAGCCTCCTATAATCCACAGAGATGTGAAATCTGCAAACATCTTGTTGGACGAACACTTCCAAGCAAAGTTATCTGATTTCGGTCTATCCAAAGTTGTCCCAGATGATGGGGGGTCTTATGTGTCAACTGTTGTTGCTGGCAGTTTCGGTTATCTGGACCCTCACTACCACTATTCCAATAGATTAACTCAGAAAAGTGATGTTTACAGCTTTGGAGTTGTTCTCTTGGAAATAATCACAAATCAACCAGTAATGGTAGGGAATGAAGAAAAGGGTCACATAAGTGATCGAGTTAGCTCCATGATATCAAGAGGGGATATCAGGGCCATAGTTGACTCAAGCTTAGAAGGAAATTTTGACATAAACTCGGCATGGAAAGCCGTAGAAATAGCAATGGCTTGTGTTTCTCCAAATCCCAACGAAAGGCCAATGATGAGTGTGGTAGTGATTGAACTACAGGAGGCTTTAGCAACCGAATTAGCTGATCCCAGGTGTTCTGTTGCACCGGTCAGCGTGAAAGTAGACACCGAATATAAGCCCTTAGCTAGGTAA 2658 0.409 MWMSFYFAVLAVLLIQTHAQPGFISIDCGAQAGVNYTDSTYGINYVSDADFINTGVSQTIASEEISRESRRQLWRLRSFPEGKRNCYKINVTRGSKYFIRTTFLYGNYDGRNMLPEFDLLLGPNRWDTVTIYNATSIRHKEIVHVTSMDYVQICLVDTGNGTPFITAIEFRTLNNDAYVTQFGSLELYNYLRCDLGSNTINRYPVDVYDRYWYSRSSWNDCNFGENWKPLNASIPDDSLNENDYKPGATIMSTAVEPQNDSAPLVISWKPQLETDEFYVYMHFTEIQVLTTNQTRHFNFMLNDESWYENFSPRYHGMNTIYSTLAISGKEIKFSLERTENSTLPPIISAIEIYRVIDLQKPETLQGDVEAITRIKSVYGVKRDWEGDPCAPAAYLWDGLNCTYLGNEFPRITAVNLSSSGLSGKIDPSISNLTMLEKLDLSNNSLNGEVPDFLSQLQHLKILNLEKNDLSGSIPSALVEKSRQGSLSLSVGQNPYLCESGQCNEKEKKNTVIPIVASICGVLILLIAVAILWILKSQKSKVEKFTDSVAVNHQSEISQQFTEKDNSFQQRKSQMYSYYDVLQITNNFKRIIGKGGFGTVYLGFIDDTPVAVKMLSPSAVHGYQQFQAEVKLLLRVHHKNLTSLIGYCNEGTNKGLIYEYMAKGNLREHLSGKHRESPFLSWKDRLGVALDAALGLEYLQNGCKPPIIHRDVKSANILLDEHFQAKLSDFGLSKVVPDDGGSYVSTVVAGSFGYLDPHYHYSNRLTQKSDVYSFGVVLLEIITNQPVMVGNEEKGHISDRVSSMISRGDIRAIVDSSLEGNFDINSAWKAVEIAMACVSPNPNERPMMSVVVIELQEALATELADPRCSVAPVSVKVDTEYKPLAR* 886
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2494 885 Pfam Protein tyrosine and serine/threonine kinase 587 852 IPR001245 GO:0004672|GO:0006468
Vra5g2494 885 ProSiteProfiles Protein kinase domain profile. 585 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2494 885 CDD STKc_IRAK 591 856 - -
Vra5g2494 885 SMART serkin_6 585 858 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2494 885 Pfam Malectin-like domain 26 355 IPR024788 -
Vra5g2494 885 PANTHER PUTATIVE-RELATED 9 869 - -
Vra5g2494 885 SUPERFAMILY L domain-like 395 480 - -
Vra5g2494 885 SUPERFAMILY Protein kinase-like (PK-like) 567 852 IPR011009 -
Vra5g2494 885 PANTHER OS07G0107800 PROTEIN-RELATED 9 869 - -
Vra5g2494 885 Gene3D Phosphorylase Kinase; domain 1 557 659 - -
Vra5g2494 885 Gene3D Transferase(Phosphotransferase) domain 1 660 868 - -
Vra5g2494 885 ProSitePatterns Serine/Threonine protein kinases active-site signature. 706 718 IPR008271 GO:0004672|GO:0006468
Vra5g2494 885 ProSitePatterns Protein kinases ATP-binding region signature. 591 612 IPR017441 GO:0005524
Vra5g2494 885 Gene3D Ribonuclease Inhibitor 369 488 IPR032675 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2494 Vra-Chr5 31886824 31893577 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2494 6 885 Receptor kinase-like Gene Family AT2G19210 47.768 0.0 799
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-I-1 Vra5g2494 Malectin_like 1e-107 CL0202
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2494 - - gmx:100170722 1204.12
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2494 5 31886824 31893577 Vra5g2494 5 31886824 31893577 ECH