Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2487 ATGGGCAAAGCTACTAGATGGTTGAAGGGGTTGCTGGGAATGAAGAAAGACAGAGACTGCTGTGGCTATTCAGGCTCGCTGACTACTGACAAGAGGGAAAAGAAACAATCGGAGAAGAATGAAGAGAGTCACATTACATCATCTACCATTGATCATACTAAGCGCAGATTCTATGTTGCCAAAAAAGAGGGTGTGAAGAACAAACAGGTCACTGGTGTGGCAGTTGAGAGATCAAGAAGGAGTGGCAGAAACACCTTGATGATTGGAAGCAAGGAGGGCTGGGCTGCTGTGTCAATTCAATCCATTTTCAGAGGTTATTTGGCGCGAAAAGCTCTTAGAGCACTCAAAGGATTAGTTAAGATACAGGCTCTTGTCAGAGGGTATCTAGTTCGGAAAAGGGTGGCTGCAACTCTTCACAGTGTGCAAGCAATGATAAGAGCTCAAGCTGTTGCTCGATCGGTTCGAGCTCGTCGATCCATGGACAAGGAAAACAGATTTCACCCAGAATCTCCTTCCAGAAAATATGCGCAGCAACAGTTTGATGCAACAAGAAATTATCAATCTCGCAACAGAAGGGCACGCATATACTGTAAGGCCCCATCGGATGGATTTGACGAGAGCTCAAAAGTTTCTGAGTTTGACACTCGCATGGCCCATTCAAGATCTCGGAGCATTAACACTGCAATGTCTGAATGTGGAGAAGAGCTGCATTATCAAGCAATGTCCTCCTCACTTCCATGTCCAGTTAAAGGTCGAATCTCCCTTCATGAAAGGCGTCAGCAGCCTCAAGAGTTTGAATGGTTCTTCAATCTTGATGAAGGTAATAAGTTCTCCTCAGCACACAACACCCCTCGTCTATCAAAATGTACGATACCAGCTACTCCATTGAAGAGTGTTTGTGGTGACACCTTCAGGAGCTGCTCCGATTTCCCTAACTACATGGCCAACACTCACTCTTCTAAGGCCAAACTAAGGTCTCACAGTGCTCCCAAGCAAAGACCGGAACACAGGAAAAGGCTTTCGATCAATGAAATCATGGCAGCCAGAAACAGTGTCAGTGGTGTTGGAAAGCAGTGGTTGTCCAACCCAAAAACTCAAGACTGCTATTTCTTTGACAAGGTTATTTAG 1128 0.4539 MGKATRWLKGLLGMKKDRDCCGYSGSLTTDKREKKQSEKNEESHITSSTIDHTKRRFYVAKKEGVKNKQVTGVAVERSRRSGRNTLMIGSKEGWAAVSIQSIFRGYLARKALRALKGLVKIQALVRGYLVRKRVAATLHSVQAMIRAQAVARSVRARRSMDKENRFHPESPSRKYAQQQFDATRNYQSRNRRARIYCKAPSDGFDESSKVSEFDTRMAHSRSRSINTAMSECGEELHYQAMSSSLPCPVKGRISLHERRQQPQEFEWFFNLDEGNKFSSAHNTPRLSKCTIPATPLKSVCGDTFRSCSDFPNYMANTHSSKAKLRSHSAPKQRPEHRKRLSINEIMAARNSVSGVGKQWLSNPKTQDCYFFDKVI* 376
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2487 375 Pfam Protein of unknown function (DUF4005) 276 353 IPR025064 -
Vra5g2487 375 MobiDBLite consensus disorder prediction 318 337 - -
Vra5g2487 375 PANTHER IQ-DOMAIN 5-RELATED 1 375 - -
Vra5g2487 375 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 93 135 IPR027417 -
Vra5g2487 375 PANTHER IQ CALMODULIN-BINDING MOTIF PROTEIN 1 375 - -
Vra5g2487 375 SMART iq_5 114 135 IPR000048 GO:0005515
Vra5g2487 375 SMART iq_5 91 113 IPR000048 GO:0005515
Vra5g2487 375 MobiDBLite consensus disorder prediction 24 48 - -
Vra5g2487 375 MobiDBLite consensus disorder prediction 156 170 - -
Vra5g2487 375 ProSiteProfiles IQ motif profile. 116 143 IPR000048 GO:0005515
Vra5g2487 375 Pfam IQ calmodulin-binding motif 94 113 IPR000048 GO:0005515
Vra5g2487 375 Pfam IQ calmodulin-binding motif 119 133 IPR000048 GO:0005515
Vra5g2487 375 Gene3D - 49 116 - -
Vra5g2487 375 Gene3D - 117 167 - -
Vra5g2487 375 ProSiteProfiles IQ motif profile. 95 120 IPR000048 GO:0005515
Vra5g2487 375 MobiDBLite consensus disorder prediction 156 179 - -
Vra5g2487 375 MobiDBLite consensus disorder prediction 28 48 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2487 Vra-Chr5 31841937 31843833 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2487 1 355 IQD Protein Family AT3G16490 41.476 2.84e-70 223
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2487 - - gmx:100797296 531.176
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2487 5 31841937 31843833 Vra5g2487 5 31841937 31843833 ECH
Vra5g2487 5 31841937 31843833 Vra9g0191 9 1338235 1341021 PCT