Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2486 ATGGATGAAAGGTCAAGAAACGAGGTATCTCCTCAGCTGTTAGATTTGATCCCAAACGAGCGAGAGTGGCAGATGAAAAGAAACGAAGGAAAGTCCTCAGAGGAGAGAAAGCTCGAACTGAGGCTAGGTCCACCTGGTGAAGACTGGTCTCTCGGTGGTAAAATGGAGAATCCCAACTCAGAAAGAGAAGAGTCACTTCTCTCTCTTGGGTGCTTCCCTTCTTCCAACATGTCTCATGCAATACTCAGCCCCAACAATGGGTTCCAAAGCAAGGCTTCTCCATGGCCAAACTACCACAACAAGAGTAACAACAAAGCCTCTTCACCTTTTCTTCAGTTCCCACCAGCTGCACCCGTGATGGGAAAAGATGCTTCACAAAACTGCTGCCCTAAGGTGGTAGAGTTGCAGAATGGTTGTGGTGGTGGTGATAGCAGAGTGTTCTCTCCCTCTCCTGCAAATACAGCTGTGTCCCAGCCCAACACCTCTCAGAAAAGAACTGCTCCCGCTCCAGTGGTGGGGTGGCCCCCAATTCGTTCCTTCAGGAAGAACCTTGCAAGCAGCAGCGCTTCTAAGCCATCAACTGAGTCACAGCCTGAGCAGCACAACAAGGTCGCTGGTAAAAAACCTGTTGATAACTATGGTGGTAAAGGTTTGTTTGTTAAGATCAACATGGATGGAGTTCCAATAGGGAGAAAAGTGGACCTCAATGCTTATGACAGCTATGAAAATCTCTCTTCTGCTGTGGACGAGCTTTTCAGAGGTCTTCTTGCTGCTCAAAGAGATTCCTCTGCTGGTGGAGTTCACAACAAGCAGGATGAAGAGAAAGCAATCACGGGTTTATTGGATGGAAGTGGAGAGTATACTCTTGTTTATGAGGATAATGAAGGAGACAGGATGCTTGTTGGGGATGTGCCATGGCACATGTTTGTAGCAACAGTGAAGAGGCTGAGAGTGTTAAAGAGTTCAGAGCTTTCTGCTTTTACCCTTGGCAGTAAGCAAGAGAAGATATCTCTTGAGTCAGCAATGAAATAA 1032 0.47 MDERSRNEVSPQLLDLIPNEREWQMKRNEGKSSEERKLELRLGPPGEDWSLGGKMENPNSEREESLLSLGCFPSSNMSHAILSPNNGFQSKASPWPNYHNKSNNKASSPFLQFPPAAPVMGKDASQNCCPKVVELQNGCGGGDSRVFSPSPANTAVSQPNTSQKRTAPAPVVGWPPIRSFRKNLASSSASKPSTESQPEQHNKVAGKKPVDNYGGKGLFVKINMDGVPIGRKVDLNAYDSYENLSSAVDELFRGLLAAQRDSSAGGVHNKQDEEKAITGLLDGSGEYTLVYEDNEGDRMLVGDVPWHMFVATVKRLRVLKSSELSAFTLGSKQEKISLESAMK* 344
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2486 343 MobiDBLite consensus disorder prediction 147 167 - -
Vra5g2486 343 Gene3D - 213 332 - -
Vra5g2486 343 Pfam AUX/IAA family 38 326 IPR033389 -
Vra5g2486 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 6 334 IPR003311 GO:0005634|GO:0006355
Vra5g2486 343 PANTHER AUXIN-RESPONSIVE PROTEIN IAA26 6 334 - -
Vra5g2486 343 SUPERFAMILY CAD & PB1 domains 211 318 - -
Vra5g2486 343 MobiDBLite consensus disorder prediction 20 43 - -
Vra5g2486 343 MobiDBLite consensus disorder prediction 1 65 - -
Vra5g2486 343 MobiDBLite consensus disorder prediction 181 200 - -
Vra5g2486 343 ProSiteProfiles PB1 domain profile. 217 321 IPR000270 GO:0005515
Vra5g2486 343 MobiDBLite consensus disorder prediction 144 210 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2486 Vra-Chr5 31825578 31829463 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2486 220 332 B3 DNA Binding Superfamily AT4G23980 33.628 1.62e-13 69.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX or IAA Vra5g2486 AUX_IAA 9.8e-72 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2486 K14484 - gmx:100804593 529.25
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra9g0188 9 1312382 1315552 Vra5g2486 5 31825578 31829463 ECH
Vra5g2486 5 31825578 31829463 Vra5g2486 5 31825578 31829463 ECH
Vra5g2486 5 31825578 31829463 Vra9g0188 9 1312382 1315552 PCT