Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2484 ATGCTATTAATTTTAGCTGCAAGAAAATATCGAGATGTCCCCATCATAACTTGGAAACTTCTATTCTCGTTTGTTTTAAGCAAAGAGATGAATCCTTCAATAAAACAACGTTTGAGGTTGCTACTTTTATATGTAATTCTGCTTCGTCTTTGTTGCACGAGTTCTTATCCCACGCCAACAAACTGCACCGACACAAGCCGCGTTTGTACTTCTTTCATGGCCTTCAAGCCTAAACCGAGCCAAACCTTGGCTGTGATACAAAGCATGTTTGACGTGTTGCCCGGTGAGATCACTTACGAAGACAATGGCTGGGATTATTTATTCATCAGGAAAAACTGTTCTTGTGATGCTGGTATGAAGAAATTTGTGTCTAACACCACACTCACAGTGAAATCCAATGGAGGGTTTGTGCATGATCTGGTGAAGGAAGCCTATGATGGGCTTGCTCTCTTACCCAACACCACATATGGGGCAAGAAAAGATCATGGTGTCATATCACTGAACTTGTTCTGTAGCTGCTCCAGTGGACTGTGGAACTATTTGATGAGCTATGTCATAAAAAATGGGGACAGTGTTGAGTCACTAGCAAGCCGGTTTGGGGTTAGTATGGATAGCATTGAGACAGTGAATAATGGCATTGACAATCCTGTTCCTGGTGAGCTTTATCACTTCAAGAACGACACTCCTCCGGTTCCAGTCCCTTCCCCCTCTGTAGATGGATTTTCAGCCGACCAAATCAACCAGAAGGGTCGTATGCCCCATGAATGGATCGTAGGAGGTTTTGCTGTTGGTCTTGCTCTGATAATATTGAGCGTTGTTGTCTGTTTATTCCTGAGATCGCCTGATTGTTTGGTTGAAGCCAGAAATAATGCAACAAATTCTGCAGGAAAGATCTCTAACAAGTTCTATGTTTTTGGCAATCCAAATTTGTTTTGTGGATGTGGCAAACCTGTGGACCAGAAGCAAACTGATGGTGAATCCAGCAGTCACCAAATTACCGTAGCAACCAAAGCATCGTCCCTAATACCTCACATGTTGGACATGGATAGGCCTGTAGTTTTTTCATACGAAGAGATTTTTGCCTCGACGGATAGTTTCTCTGATTCAAATCTGCTTGGGCACAGAACACATGGTTCTGTTTACTATGGTCTCCTTCGTGACCAGGAAGTTGCTATTAAGAGAATTACAGCCACTAAAAATAAAGAACTTATGTCAGAGATAAAAGTTCTGTGCAAGGTTCATCATGCTAATCTGGTAGAATTGGTCGGCTATGCGGCTAGTCATGATGATTTTTTCCTTATTTATGAGTATGCTCAAAAGGGTTCACTCAGCAGCCATTTGCACGATACTCAAAATAAGGGTCATTCATCTCTTTCTTGGATCACAAGGGTCCAGATTGCACTTGACGCTGCTAGGGCCATTGAATACATACACGAACATACAAAAACTCGCTACGTCCATCAAGGTATCAAGACAAGCAACATATTGCTTGATGCTTCCTTTAGAGCCAAGATATCAGATTTTGGGTTAGCAAAACTAGTTGGTAAAACAAATGAGGGAGAAACCACAGCATCCAAAGGTGTAAATGCATATGGATATCTCGCTCCAGAATACTTTAGCAATGGCCTTGCAACGACCAAAAGTGATGTCTATGCATTTGGTGTTGTTCTTTTTGAGGTTATATCAGGGAAGGAGGCCATCATTCAAACACAAGGTCCTGAAAAACGACCATTGGCATCTATTATGTTGGCAATTCTTAGGAACTCACCCGATTCCGATAGCATGTCAAGCACAAGAAACCTCGTTGATCCTACTATGATGGATCTGTATCCCCATGACTGTGTACATAAGATGGCCATGCTGGCAAAGCAATGTGTGGAAGAGGATCCCGTATTACGCCCTGACATGAAGCAAGTTGTGATTTCCCTCTCACAAATCTTGCTGTCTTCTGCTGAGTGGGAAGCCACTCTTGCAGGGAACAGCCAGGTATTCAGCGCTCTTGTTCAGGGAAGATAG 2016 0.4276 MLLILAARKYRDVPIITWKLLFSFVLSKEMNPSIKQRLRLLLLYVILLRLCCTSSYPTPTNCTDTSRVCTSFMAFKPKPSQTLAVIQSMFDVLPGEITYEDNGWDYLFIRKNCSCDAGMKKFVSNTTLTVKSNGGFVHDLVKEAYDGLALLPNTTYGARKDHGVISLNLFCSCSSGLWNYLMSYVIKNGDSVESLASRFGVSMDSIETVNNGIDNPVPGELYHFKNDTPPVPVPSPSVDGFSADQINQKGRMPHEWIVGGFAVGLALIILSVVVCLFLRSPDCLVEARNNATNSAGKISNKFYVFGNPNLFCGCGKPVDQKQTDGESSSHQITVATKASSLIPHMLDMDRPVVFSYEEIFASTDSFSDSNLLGHRTHGSVYYGLLRDQEVAIKRITATKNKELMSEIKVLCKVHHANLVELVGYAASHDDFFLIYEYAQKGSLSSHLHDTQNKGHSSLSWITRVQIALDAARAIEYIHEHTKTRYVHQGIKTSNILLDASFRAKISDFGLAKLVGKTNEGETTASKGVNAYGYLAPEYFSNGLATTKSDVYAFGVVLFEVISGKEAIIQTQGPEKRPLASIMLAILRNSPDSDSMSSTRNLVDPTMMDLYPHDCVHKMAMLAKQCVEEDPVLRPDMKQVVISLSQILLSSAEWEATLAGNSQVFSALVQGR* 672
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2484 671 ProSiteProfiles Protein kinase domain profile. 366 648 IPR000719 GO:0004672|GO:0005524|GO:0006468
Vra5g2484 671 SUPERFAMILY Protein kinase-like (PK-like) 340 643 IPR011009 -
Vra5g2484 671 Gene3D Phosphorylase Kinase; domain 1 339 437 - -
Vra5g2484 671 SUPERFAMILY LysM domain 182 219 IPR036779 -
Vra5g2484 671 Gene3D Transferase(Phosphotransferase) domain 1 439 662 - -
Vra5g2484 671 Pfam LysM domain 184 217 IPR018392 -
Vra5g2484 671 Pfam Protein tyrosine and serine/threonine kinase 370 641 IPR001245 GO:0004672|GO:0006468
Vra5g2484 671 PANTHER CHITIN ELICITOR RECEPTOR KINASE 1-RELATED 61 671 IPR044812 GO:0019199|GO:0045087
Vra5g2484 671 PANTHER BNAA06G02020D PROTEIN 61 671 - -
Vra5g2484 671 ProSiteProfiles LysM domain profile. 182 229 IPR018392 -
Vra5g2484 671 CDD LysM 183 215 IPR018392 -
Vra5g2484 671 Gene3D LysM domain 181 222 IPR036779 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2484 Vra-Chr5 31802521 31807645 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2484 59 671 Receptor kinase-like Gene Family AT1G51940 57.740 0.0 692
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LysM Vra5g2484 PK_Tyr_Ser-Thr 1.2e-45 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2484 - - vra:106762524 1312.36
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2484 5 31802521 31807645 Vra5g2484 5 31802521 31807645 ECH
Vra5g2484 5 31802521 31807645 Vra9g0187 9 1300962 1307720 PCT