Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2480 ATGACTCGGCGGTGCTCCCACTGCAGCAACAACGGCCACAACTCCCGCACCTGCCCGTCGCGGGGGGTGGGCGCCGGCGTCAAGCTGTTCGGGGTGAGACTGACGGATGGATCAATCATAAAGAAGAGTGCCAGTATGGGAAACCTTAACCTCGCCTCCACACACCACCATTCTTCTCCTTCTTCTTCCAACCTTGCCGCCTCCTCTCCCAATCCAAGCTCTCCTTGCTCTGACCCGCCCCATGAGCCCCAAGGTTACTTGTCCGATGACCCCGCCCATATCTCCACCTTCGCTAACCGCCGCGGTGAAAGAAAAAAAGGTGTTGCGTGGACTGAAGAAGAACATAGGCTGTTCTTAATTGGTCTCCAGAAGCTGGGCAAAGGAGACTGGCGTGGGATAGCACGTAATTTTGTCGTAACAAGGACCCCTACTCAAGTAGCAAGTCATGCCCAGAAGTATTTTATCCGACAAAGTCATGCTACCAGGAGAAAGAGACGTTCCAGCCTTTTTGACATGGTTCCGGATATGACTTCAGATCCACCTTCTGTGCCAGAAGAACAAGTTCTGCTTCCACCTTCTGAGAACTCGCAACCTTGTAATGGAAAATCGCAGCCTTCACTAAATCTCTCCCTCAAATCAGAATTTGAACCCATGGAAACTACTTCTCAAGAAAACGTGGAACAGACCAATGAAACTATGATGGGATCAAACGGACTGACATCAATGGCTCCTCATGGATTCTTCCCCACTTATTTACCTGTTCCATTTCCCATATGGCCATCAACTGCAACTCCTTTTGAAGAAGTTAAGGGAGGAGAGACATCCCATCATCAGGTCCACAGGCCAATCCCAGTCATTGCCAAGGAACCTGTGAATGTTGACGAACTCGTGGGAATGTCTCATCTCAGCATTGGGGAAACACAGGTACGTGATAGAGAGCCTTCCCCACTTTCCTTAAAGTTGTTAGGGGAACCCTCTAGGCAGTCAGCATTCCATGCAAATGCTCCAGTTGGTGGTTCGGATTTAAAAACTGGCAAGAACAAAGCAATTCAAGCGGTTTGA 1062 0.4972 MTRRCSHCSNNGHNSRTCPSRGVGAGVKLFGVRLTDGSIIKKSASMGNLNLASTHHHSSPSSSNLAASSPNPSSPCSDPPHEPQGYLSDDPAHISTFANRRGERKKGVAWTEEEHRLFLIGLQKLGKGDWRGIARNFVVTRTPTQVASHAQKYFIRQSHATRRKRRSSLFDMVPDMTSDPPSVPEEQVLLPPSENSQPCNGKSQPSLNLSLKSEFEPMETTSQENVEQTNETMMGSNGLTSMAPHGFFPTYLPVPFPIWPSTATPFEEVKGGETSHHQVHRPIPVIAKEPVNVDELVGMSHLSIGETQVRDREPSPLSLKLLGEPSRQSAFHANAPVGGSDLKTGKNKAIQAV* 354
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2480 353 MobiDBLite consensus disorder prediction 164 207 - -
Vra5g2480 353 MobiDBLite consensus disorder prediction 51 72 - -
Vra5g2480 353 MobiDBLite consensus disorder prediction 189 207 - -
Vra5g2480 353 Gene3D - 108 159 - -
Vra5g2480 353 MobiDBLite consensus disorder prediction 1 18 - -
Vra5g2480 353 PANTHER OS01G0187900 PROTEIN 1 346 - -
Vra5g2480 353 TIGRFAM myb_SHAQKYF: myb-like DNA-binding domain, SHAQKYF class 105 157 IPR006447 GO:0003677
Vra5g2480 353 Pfam Myb-like DNA-binding domain 109 154 IPR001005 -
Vra5g2480 353 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 102 158 IPR017930 -
Vra5g2480 353 MobiDBLite consensus disorder prediction 51 92 - -
Vra5g2480 353 MobiDBLite consensus disorder prediction 330 353 - -
Vra5g2480 353 PANTHER TRANSCRIPTION FACTOR KUA1 1 346 - -
Vra5g2480 353 ProSiteProfiles SANT domain profile. 110 158 IPR017884 -
Vra5g2480 353 MobiDBLite consensus disorder prediction 1 22 - -
Vra5g2480 353 CDD SANT 109 154 IPR001005 -
Vra5g2480 353 SMART sant 106 156 IPR001005 -
Vra5g2480 353 SUPERFAMILY Homeodomain-like 104 158 IPR009057 -
Vra5g2480 353 ProSiteProfiles Myb-like domain profile. 102 154 IPR001005 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2480 Vra-Chr5 31766148 31772066 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB-related Vra5g2480 Myb_DNA-binding 5.1e-11 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2480 - - gmx:778036 613.609
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2480 5 31766148 31772066 Vra5g2480 5 31766148 31772066 ECH