Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2473 ATGGCAATGTCCTGCAAGGATGGTAAACCAGGATTGGATAACGGGAAATATGTCCGTTACACGCCTGAGCAGGTTGAGGCCCTTGAGAGACTTTATCATGACTGCCCCAAACCCAGTTCCATACGCCGCCAGCAGCTCATTCGCGAGTGTCCTATTCTCTCCAACATTGAGCCCAAGCAAATCAAAGTCTGGTTTCAGAACAGAAGGTGTAGAGAGAAGCAGAGAAAAGAGGCCTCGCGGTTGCAAGCTGTAAATAGGAAGCTCACAGCCATGAACAAGCTTCTCATGGAGGAGAATGATAGGTTGCAGAAGCAGGTGTCTCAGTTGGTCTACGAAAATGGCTACTTTCGCCAACACACTCAGAATACTGCGCTTCCAACCAAAGACACGAGCTGTGAGTCGGCGGTGACTAGTGGTCAACGCAGTTTGACAGCCCAGCATCCCCCGAGGGATGCAAGTCCTGCAGGGCTTATGTCCATTGCAGAAGAGACTTTAGCAGAGTTTCTTTCGAAGGCAACTGGAACTGCTGTTGAGTGGGTCCAAATGCCTGGAATGAAGCCTGGTCCGGATTCCATTGGAATCGTTGCTATTTCTCATGGTTGCACTGGTGTGGCAGCAAGAGCCTGCGGCCTTGTCGGTTTAGAACCCACAAGGGTTGCAGAAATCCTCAAAGATCGGCCTTCATGGTTTCGTGATTGCCGAGCTGTGGATGTTCTGAATGTGCTGCCCACAGCAAATGGTGGAACCATAGAGCTGCTTTATATGCAGCTATATGCACCAACCACGTTGGCACCTGCCCGTGACTTCTGGTTGTTGCGTTACACTTCTGTTTTAGAAGATGGGAGCCTAGTAATATGTGAGAGGTCTCTTAAAAATACACAAAATGGTCCAACCATGCCTCCCGTGCAGCATTTTGTTAGAGCAGAGATGCTTCCTAGTGGGTACCTTATAAGACCCTGTGAGGGAGGTGGTTCTATCATTCACATTGTTGATCACATGGATTTGGAGCCTTGGAGCGTTCCTGAAGTACTGCGACCACTGTATGAATCATCAACAGTGTTGGCTCAGAAGACAACTATGGTGGCACTACGTCAACTAAGGCAGATTTCACATGAAGTTTCTCAGTCTAATGTGACTGGGTGGGGGAGACGACCTGCAGCTCTTAGAGCACTTGGCCAGAGACTCAGCCGTGGCTTCAATGAGGCAATCAATGGGTTCACTGACGAGGGTTGGTCAATGATCGGCAATGATGGTGTTGATGATGTTACAGTTCTAGTGAATTCGTCACCTGACAAGTTAATGGGTTTGAATCTTTCCTTTGCCAATGGATTTCCATCTATCAGCAACGCAGTCTTGTGTGCCAAAGCTTCAATGCTATTACAGAATGTGCCTCCAGCCATATTACTCAGGTTCCTGCGGGAGCATAGATCAGAATGGGCAGACAACAACATGGATGCTTATTCAGCCGCTGCCATTAAAGTTGGTCCTTGTGGTTTACCAGGATCTCGTGTTGGAAATTATGGGGGTCAAGTTATTCTTCCTCTAGCCCACACCATTGAGCATGAGGAGTTTCTTGAAGTTATTAAGTTGGAAGGAATTGCTCATTCTCCTGAAGATGCAATAATGCCCAGGGAAGTATTTCTTTTGCAACTGTGCAGTGGAATGGATGAAAATGCTGTTGGAACCTGTGCAGAGCTTATATTTGCTCCAATTGATGCATCCTTTGCTGATGATGCCCCCCTTCTGCCTTCTGGATTTCGCATCATCCCTCTTGATTCTGCAAAGGAAGCATCCAATCCAAATCGCACACTTGACCTGGCATCTGCTCTAGACATTGGCCCAACTGGAAACAGAGCATCAAATGATTATTCTGGAAATTCTGGATCTATGAGATCTGTGATGACAATAGCATTTGAATTTGCCTTTGAAAGTCATATGCAGGATCATGTAGCATCCATGGCACGCCAGTATGTTCGAAGCATTATATCATCTGTCCAAAGGGTAGCATTAGCACTCTCTCCTTCTCATTTAAGTTCACAAGCTGGGCTAAGAACACCACTGGGTACCCCTGAAGCGCAAACACTAGCTCGCTGGATCTGCAATAGTTATAGATGCTATTTGGGGGTCGAGCTACTTAAATCCAATAACGAAGGGAACGAATCTTTGCTCAAGTCCTTGTGGCATCACTCAGATGCAATATTATGCTGCACTCTAAAGGCATTGCCTGTGTTCACTTTCGCCAACCAGGCAGGGCTTGACATGCTGGAGACCACCTTAGTTGCTTTGCAAGATATAACATTGGAGAAGATATTCGATGATCATGGCCGAAAGATTCTGTGCTCAGAGTTTCCCCAAATTATTCAACAGGGTTTTGCATGCCTTCAAGGTGGTATTTGTCTCTCAAGCATGGGGCGACCCATCTCATATGAAAGAGTAGTAGCTTGGAAGGTGTTGAATGAAGAAGAGAATGCTCATTGTATTTGCTTTATGTTTATGAACTGGTCTTTCGTTTGA 2514 0.4646 MAMSCKDGKPGLDNGKYVRYTPEQVEALERLYHDCPKPSSIRRQQLIRECPILSNIEPKQIKVWFQNRRCREKQRKEASRLQAVNRKLTAMNKLLMEENDRLQKQVSQLVYENGYFRQHTQNTALPTKDTSCESAVTSGQRSLTAQHPPRDASPAGLMSIAEETLAEFLSKATGTAVEWVQMPGMKPGPDSIGIVAISHGCTGVAARACGLVGLEPTRVAEILKDRPSWFRDCRAVDVLNVLPTANGGTIELLYMQLYAPTTLAPARDFWLLRYTSVLEDGSLVICERSLKNTQNGPTMPPVQHFVRAEMLPSGYLIRPCEGGGSIIHIVDHMDLEPWSVPEVLRPLYESSTVLAQKTTMVALRQLRQISHEVSQSNVTGWGRRPAALRALGQRLSRGFNEAINGFTDEGWSMIGNDGVDDVTVLVNSSPDKLMGLNLSFANGFPSISNAVLCAKASMLLQNVPPAILLRFLREHRSEWADNNMDAYSAAAIKVGPCGLPGSRVGNYGGQVILPLAHTIEHEEFLEVIKLEGIAHSPEDAIMPREVFLLQLCSGMDENAVGTCAELIFAPIDASFADDAPLLPSGFRIIPLDSAKEASNPNRTLDLASALDIGPTGNRASNDYSGNSGSMRSVMTIAFEFAFESHMQDHVASMARQYVRSIISSVQRVALALSPSHLSSQAGLRTPLGTPEAQTLARWICNSYRCYLGVELLKSNNEGNESLLKSLWHHSDAILCCTLKALPVFTFANQAGLDMLETTLVALQDITLEKIFDDHGRKILCSEFPQIIQQGFACLQGGICLSSMGRPISYERVVAWKVLNEEENAHCICFMFMNWSFV* 838
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2473 837 Pfam START domain 160 368 IPR002913 GO:0008289
Vra5g2473 837 PANTHER CLASS III HD-ZIP PROTEIN CNA1 1 837 - -
Vra5g2473 837 MobiDBLite consensus disorder prediction 126 153 - -
Vra5g2473 837 Coils Coil 71 112 - -
Vra5g2473 837 ProSiteProfiles 'Homeobox' domain profile. 11 75 IPR001356 GO:0003677
Vra5g2473 837 ProSiteProfiles START domain profile. 150 365 IPR002913 GO:0008289
Vra5g2473 837 Gene3D - 12 82 - -
Vra5g2473 837 SUPERFAMILY Homeodomain-like 13 79 IPR009057 -
Vra5g2473 837 Gene3D - 194 372 IPR023393 -
Vra5g2473 837 SMART HOX_1 13 79 IPR001356 GO:0003677
Vra5g2473 837 SUPERFAMILY Bet v1-like 159 348 - -
Vra5g2473 837 CDD START_ArGLABRA2_like 154 369 - -
Vra5g2473 837 CDD homeodomain 16 76 IPR001356 GO:0003677
Vra5g2473 837 SMART START_1 159 369 IPR002913 GO:0008289
Vra5g2473 837 Pfam Homeodomain 16 74 IPR001356 GO:0003677
Vra5g2473 837 MobiDBLite consensus disorder prediction 126 147 - -
Vra5g2473 837 Pfam MEKHLA domain 694 836 IPR013978 -
Vra5g2473 837 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN ATHB-14 1 837 IPR044830 GO:0003700
Vra5g2473 837 CDD bZIP 68 107 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2473 Vra-Chr5 31689047 31696268 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2473 1 789 Homeobox Transcription Factor Family AT1G52150 86.742 0.0 1430
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g2473 START 1.6e-53 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2473 K09338 - zju:107428556 1605.11
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2473 5 31689047 31696268 Vra5g2473 5 31689047 31696268 ECH
Vra5g2473 5 31689047 31696268 Vra9g0176 9 1202087 1209992 PCT