Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2470 ATGGCTGTCACCAACACTTCTGTTCAAGCTTCCATTCATTTCCAAGTTGGTGGAAGCCTCGGCTGGCACGAACCTGACCCCAACAATACTGAATTTTACAGCCAATGGGCTCAAAGGAACAGGTTTCAAGTTGGTGATGCTCTTGTTTTTGAGTACCAGAATGACTCAGTTCTCAGTGTGGAGAAATTGGATTACATGAACTGTGATGCAAGTAACCCCATCACAGCTTTTGACAATGGTAAGAGCACTTTTATTCTTGACAGGCCTGGGGACTTCTACTTCATCAGTGGAACCGATGAACACTGCAAGAATGGGCAAAGATTAGTTGTGGATGTGATTCATGAACATCATTTTACATCTCCGCCACCCATTTCTCTTCCACCACAAGGCTTTCCACCAATGGCTTCTCCACCTGATCAAAGCTTCGAGGATTCAACATCTGCCTCAGTGATGATTACTGCAACTTCTATGTCTGTTTTTGTCACGTTTGTTATTGTGGTGCTGTTAGCACCTTGA 516 0.4419 MAVTNTSVQASIHFQVGGSLGWHEPDPNNTEFYSQWAQRNRFQVGDALVFEYQNDSVLSVEKLDYMNCDASNPITAFDNGKSTFILDRPGDFYFISGTDEHCKNGQRLVVDVIHEHHFTSPPPISLPPQGFPPMASPPDQSFEDSTSASVMITATSMSVFVTFVIVVLLAP* 172
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2470 171 PANTHER EARLY NODULIN-LIKE PROTEIN 2 4 160 - -
Vra5g2470 171 SUPERFAMILY Cupredoxins 12 113 IPR008972 -
Vra5g2470 171 ProSiteProfiles Phytocyanin domain profile. 12 114 IPR003245 GO:0009055
Vra5g2470 171 CDD OsENODL1_like 14 113 IPR041846 -
Vra5g2470 171 Gene3D - 12 121 IPR008972 -
Vra5g2470 171 PANTHER BLUE COPPER PROTEIN 4 160 IPR039391 GO:0009055
Vra5g2470 171 Pfam Plastocyanin-like domain 29 106 IPR003245 GO:0009055
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2470 Vra-Chr5 31662823 31663472 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2470 1 123 Phytocyanin Superfamily AT1G79800 49.606 8.80e-42 137
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2470 - - gmx:100783893 248.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2470 5 31662823 31663472 Vra5g2470 5 31662823 31663472 ECH