Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2467 ATGATCGATACGCCGTGTCACAAAACTCCTAGCAGTAGCACCAGCAACTCCTCCACTTCAAAACCCCATAAAACAGAGACTCCAAAACAGAGCAAGACCAAAAAACAGAGCAAGCTCAAGAGAAACAGAGACCCCACCAAGCATCCCGTCTACCACGGTGTTCGAATGCGCAATTGGGGCAAATGGGTATCCGAAATTCGCGAGCCACGCAAGAAATCACGCATATGGCTCGGAACTTTTGCCACGCCTGAAATGGCGGCACGCGCGCACGATGTTGCAGCTCTGAGCATCAAGGGCCACACGGCCGTTCTCAATTTCCCTAACCTAATAAATATGCTTCCCAGACCCGTGACGTGTGCCCCACGTGACATCCAAGTGGCCGCGGCGGAAGCCGCCGCGATGGTGGAGTTCGACCGCGAGTGTTCTGATGAGGCGGAGTCCTCGGAGCTAAGCGAGATTGTGGAACTGCCGAACATAGAAGAGAGCTTGGAATCGGTGGAGTCGAGAAGTGAGTTCGCGTTTACTGACTCAGTGGATAGTTGGTTGTACCCTCCAATGGCAGTGGGAAGCATTTGTGAGATGATGGTTGGTGAAGATGAGTGTGGATTCTTCCACTTTCAGACTGATCATCAAAAAACATGTTCCCTTTAG 651 0.5177 MIDTPCHKTPSSSTSNSSTSKPHKTETPKQSKTKKQSKLKRNRDPTKHPVYHGVRMRNWGKWVSEIREPRKKSRIWLGTFATPEMAARAHDVAALSIKGHTAVLNFPNLINMLPRPVTCAPRDIQVAAAEAAAMVEFDRECSDEAESSELSEIVELPNIEESLESVESRSEFAFTDSVDSWLYPPMAVGSICEMMVGEDECGFFHFQTDHQKTCSL* 217
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2467 216 MobiDBLite consensus disorder prediction 1 24 - -
Vra5g2467 216 MobiDBLite consensus disorder prediction 1 51 - -
Vra5g2467 216 ProSiteProfiles AP2/ERF domain profile. 50 107 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 Gene3D AP2/ERF domain 50 108 IPR036955 GO:0003700|GO:0006355
Vra5g2467 216 SUPERFAMILY DNA-binding domain 50 108 IPR016177 GO:0003677
Vra5g2467 216 SMART rav1_2 50 113 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 Pfam AP2 domain 49 100 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR ERF042-RELATED 9 214 - -
Vra5g2467 216 PRINTS Ethylene responsive element binding protein signature 51 62 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 PRINTS Ethylene responsive element binding protein signature 73 89 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 CDD AP2 51 109 IPR001471 GO:0003700|GO:0006355
Vra5g2467 216 PANTHER AP2 DOMAIN CLASS TRANSCRIPTION FACTOR 9 214 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2467 Vra-Chr5 31646361 31647744 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2467 29 185 AP2-EREBP Transcription Factor Family AT5G11590 55.495 2.14e-59 185
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Vra5g2467 AP2 7.8e-14 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2467 K09286 - gmx:100787471 330.487
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2467 5 31646361 31647744 Vra5g2467 5 31646361 31647744 ECH