Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2464 ATGGCTGGCATAGCATTCGGACGCTTCGATGATTCTTTTAGTTTTGCCTCCATCAAGGCCTACATTGCTGAGTTCATCTCAACCCTTCTCTTTGTTTTTGCTGGTGTTGGTTCAGCCATAGCCTATGCTAAGTTGACATCAGATGCAGCTCTTGATCCTGCTGGGTTGGTGGCTGTTGCCATTTGCCATGGTTTTGCTCTCTTCGTTGCTGTTTCAGTTGGAGCCAACATTTCTGGCGGCCATGTTAACCCTGCTGTGACCTTTGGGTTGGCTCTTGGAGGTCACATCACCATCCTCACCGGTCTCTTCTACTGGATTGCACAGCTCCTTGGCTCCATAGTGGCCTGCTTTCTCCTCAAGTTTGTCACTGGCTATAATATTCCTATCCATGGTGTTGCTGCGGGAGTTGGAGCCGGAGAAGGAGTTGTTACTGAGATCATCATCACATTTGGATTAGTGTACACTGTGTATGCCACAGCTGCAGACCCGAAGAAGGGTTCACTTGGTACAATTGCACCCATTGCCATAGGTTTCATCGTTGGTGCAAACATCTTAGCTGCAGCACCATTTTCTGGGGGATCCATGAACCCTGCACGTTCCTTTGGCCCTGCAGTTGTCAGCGGTGACTTTCATGACAACTGGATCTACTGGATTGGCCCTCTTGTTGGTGGTGGTTTGGCTGGTCTTATCTACACCTATGCCTTCATTCCCACCCAGCACCATGCACCTCTCGCCACTGATTTTTGA 747 0.494 MAGIAFGRFDDSFSFASIKAYIAEFISTLLFVFAGVGSAIAYAKLTSDAALDPAGLVAVAICHGFALFVAVSVGANISGGHVNPAVTFGLALGGHITILTGLFYWIAQLLGSIVACFLLKFVTGYNIPIHGVAAGVGAGEGVVTEIIITFGLVYTVYATAADPKKGSLGTIAPIAIGFIVGANILAAAPFSGGSMNPARSFGPAVVSGDFHDNWIYWIGPLVGGGLAGLIYTYAFIPTQHHAPLATDF* 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2464 248 Gene3D Glycerol uptake facilitator protein. 2 247 IPR023271 -
Vra5g2464 248 ProSitePatterns MIP family signature. 81 89 IPR022357 -
Vra5g2464 248 PANTHER AQUAPORIN-8 1 248 IPR034294 -
Vra5g2464 248 PRINTS Major intrinsic protein family signature 19 38 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PRINTS Major intrinsic protein family signature 63 87 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PRINTS Major intrinsic protein family signature 100 119 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PRINTS Major intrinsic protein family signature 144 162 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PRINTS Major intrinsic protein family signature 177 199 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PRINTS Major intrinsic protein family signature 214 234 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 SUPERFAMILY Aquaporin-like 14 241 IPR023271 -
Vra5g2464 248 TIGRFAM MIP: MIP family channel proteins 23 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 CDD MIP 19 233 IPR000425 GO:0015267|GO:0016020|GO:0055085
Vra5g2464 248 PANTHER MIP PROTEIN 1 248 - -
Vra5g2464 248 Pfam Major intrinsic protein 15 231 IPR000425 GO:0015267|GO:0016020|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2464 Vra-Chr5 31630659 31632151 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2464 1 248 Major Intrinsic Protein MIP AT3G16240 78.800 1.38e-137 385
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2464 K09873 - gmx:100817754 452.981
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2464 5 31630659 31632151 Vra5g2464 5 31630659 31632151 ECH