Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2458 ATGTCTAGAGCATTGGAACAGGACTACATAGGGTTGGCAGAGAAACCGTCAATGGACGGAGGCTCTGACAAACTATCTTCTTCTTCTTCGTCGTCGTCTTCTGTGGATGGTAAAACCTCATCACTCAACTTGAAGGAGACAGAGCTGAGGCTTGGTCTCCCCGGTTGCAAGTCACCAGAGAGAAAATCTGGTCCTGGACTCTGTCTTTTTGGCAGAGAGTTGCAGAACAAGCATAATGTTTGTTCAGTCGCAACCCCTTTGAAGGCTGGGGCTAAGAGGGGCTTCTCTGATGCTATTGACACTTCTTCTGGGAAAAGGGGTTCTTCTGTCACTGATGGATCTCAAGGAGCTGCTTTGTTCTCTCCTAAGGGGGGCATTGTTGGGAAGCCTCTTATTGCTTTAGACACTCAAACTAATAACTCGCATGCTAACACCTCTATCAAAGAGGTTGGTGCAGTTCCTCAATCTGCCAAACCGGTTCAGGAGAAGAATGACCAGGTTGCTGCAGCAAATGGTCATGCCAATGCTTCTGATGCAAAGGCACAAGTTGTGGGGTGGCCCCCAATTCGATCTTTCCGAAAGAACACGATGGCATCTAATTTGGCAAAAAACAGTGATGAAGGCGAGGGAAAATCTGGTTTTGGTTGTCTCTATGTAAAAGTCAGCATGGATGGTGCTCCTTATCTTAGAAAGGTTGATCTCAAAACCTATAACAACTACATGGAACTTTCTTCAGCTCTTGAGAAGATGTTCAGCTGCTTTACCATTGGTCAATGCAATTCTCCTGGATTTCCTGGGAAAGATGGACTAAGTGAGAGCTCTCTGAGGGATCTTCTTCATGGATCTGAATATGTTCTTACATATGAAGATAAAGATGGAGACTGGATGCTCGTGGGTGATGTTCCTTGGGAGATGTTCACTGATTCATGTCGGAGACTAAGGATCATGAAAGGCTCTGAAGCAATTGGGCTAGCTCCAAGAGCCATGGAGAAATCTAGAAGCCAAAACTAA 1011 0.456 MSRALEQDYIGLAEKPSMDGGSDKLSSSSSSSSSVDGKTSSLNLKETELRLGLPGCKSPERKSGPGLCLFGRELQNKHNVCSVATPLKAGAKRGFSDAIDTSSGKRGSSVTDGSQGAALFSPKGGIVGKPLIALDTQTNNSHANTSIKEVGAVPQSAKPVQEKNDQVAAANGHANASDAKAQVVGWPPIRSFRKNTMASNLAKNSDEGEGKSGFGCLYVKVSMDGAPYLRKVDLKTYNNYMELSSALEKMFSCFTIGQCNSPGFPGKDGLSESSLRDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCRRLRIMKGSEAIGLAPRAMEKSRSQN* 337
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2458 336 Gene3D - 211 330 - -
Vra5g2458 336 ProSiteProfiles PB1 domain profile. 216 318 IPR000270 GO:0005515
Vra5g2458 336 PANTHER AUXIN-RESPONSIVE PROTEIN 23 328 - -
Vra5g2458 336 MobiDBLite consensus disorder prediction 1 43 - -
Vra5g2458 336 MobiDBLite consensus disorder prediction 21 43 - -
Vra5g2458 336 Pfam AUX/IAA family 46 327 IPR033389 -
Vra5g2458 336 PANTHER AUXIN-RESPONSIVE PROTEIN IAA17 23 328 IPR003311 GO:0005634|GO:0006355
Vra5g2458 336 SUPERFAMILY CAD & PB1 domains 216 317 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2458 Vra-Chr5 31602071 31604717 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2458 218 330 B3 DNA Binding Superfamily AT1G19850 32.174 5.07e-08 52.8
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR AUX/IAA Vra5g2458 AUX_IAA 1e-90 CL0072
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2458 K14484 - gmx:100804423 551.977
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2458 5 31602071 31604717 Vra5g2458 5 31602071 31604717 ECH