Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2457 ATGATGACAGGGTTTCCTAACTGGTGGAGCATGCATCCACCATCTTTGATCCCTCCCCAATATGTTCTTCCATCTTCGTCAATTTCTTTTAATTTTTTCACCGAAAATCCAGAGCCTCCTCAGTCATGGACCCAACTGCTTTCTACTGGATTACCAGGAGAAGAAGAGAAACTTGGTTTCATTGATTTTCAGCCGAAAAAGTTTGGAAACTGGGATGACCAAATTCTTGATACTGCTTCCGGAGTTTCTAATACCTTTGATGAAATAAAGCAAGAAAATTCTCAAAGGGGCACTTTGTACGAACATGGGCGTGAAGAATTTCAGGCTTCTGGCTCCGCTGACTCATCTTGGTCACACATGGTGCCTGTTTCTTCAACCGGGTCTTCTTGTGTCACTAGCATCAGTGGCAATAATATACTTGATTTCAGTTATAACAAGTCAGATCACAGAAAAAATCTTCTACGAGATCAAATATCCGAGTGTAATAGCACAGCCACAGTTGGTGTTTGTAAGAAAGCTAGGGTTCAGTCATCTTCAAGTCAAGCACCTCTCAAGGTTCGGAAGGAGAAGCTAAGTGATAGAATAACAACACTTCACCAGCTAGTTTCCCCGTTTGGAAAGACTGACACAGCTTCTGTCTTGTTAGAAGCCATTGGATATATAAGGTTCCTGCAGGGTCAAATTGAGGCACTCAGTTCTCCTTACTTGGAAGATGCATCGAAAAACACGAGGAATCAACAGTCTCTGTTGAAAGAGAATAATGGCCGTAAAAGAAAAGGAGCTACAAACCAGGAAGGTGAAGATAAAGCAAAGGAGTTGAAGAGTAGAGGGTTATGTTTGGTGCCTGTGTCTTGTACCGAAGATGTTGTGAGCCAAAATGACTGGGGCACCCGCATATACGGCAGAGGATTTTAA 915 0.4251 MMTGFPNWWSMHPPSLIPPQYVLPSSSISFNFFTENPEPPQSWTQLLSTGLPGEEEKLGFIDFQPKKFGNWDDQILDTASGVSNTFDEIKQENSQRGTLYEHGREEFQASGSADSSWSHMVPVSSTGSSCVTSISGNNILDFSYNKSDHRKNLLRDQISECNSTATVGVCKKARVQSSSSQAPLKVRKEKLSDRITTLHQLVSPFGKTDTASVLLEAIGYIRFLQGQIEALSSPYLEDASKNTRNQQSLLKENNGRKRKGATNQEGEDKAKELKSRGLCLVPVSCTEDVVSQNDWGTRIYGRGF* 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2457 304 MobiDBLite consensus disorder prediction 241 269 - -
Vra5g2457 304 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 175 224 IPR011598 GO:0046983
Vra5g2457 304 Gene3D - 182 254 IPR036638 GO:0046983
Vra5g2457 304 MobiDBLite consensus disorder prediction 251 269 - -
Vra5g2457 304 PANTHER TRANSCRIPTION FACTOR BHLH83-RELATED 25 293 - -
Vra5g2457 304 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 185 236 IPR036638 GO:0046983
Vra5g2457 304 PANTHER OS05G0228400 PROTEIN 25 293 - -
Vra5g2457 304 CDD bHLH_AtbHLH_like 185 232 IPR045239 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2457 Vra-Chr5 31586427 31589002 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2457 171 285 Basic Helix-Loop-Helix Transcription Factor Gene Family AT1G27660 60.345 1.50e-34 129
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2457 - - vun:114183597 474.937
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2457 5 31586427 31589002 Vra5g2457 5 31586427 31589002 ECH