Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2451 ATGGGCGCTGACATGTCGAACAATCCACCACCCACTTCTCACGCCAAAGACTTCTTTGCCTCCCCAGCTCTCTCTCTCAGCCTTGCTGGGATTTTTCGCCATGCCGGTGTGGCGGCGGAGGCCGAAGCTGCCACTTCGAACATGGAGGTGGAGGAGTGGGAAGAAGGAAGTGGAGGAGGTGAAAGGCTGGAAGAGATTAGCAGCGAGAATTCCGGCCCCACGAGATCCAGATCAGAGGATGATTTTGAAGGAGAAGGTGAACATGAGGATGCTGATGCTGATGCTGACGGTGACAGAAAGAAAAAGAAGAAGAGGAAGAAATATCACAGGCACACTGCTGATCAGATCAGAGAAATGGAAGCGCTTTTCAAAGAGTCACCACATCCTGATGAAAAGCAGAGGCAACAACTGAGCAAGCAATTAGGCCTTGCTCCAAGGCAAGTCAAGTTTTGGTTCCAAAATCGTCGAACCCAAATAAAGGCAATACAAGAGCGTCATGAAAATTCTTTGTTGAAGTCAGAAATAGAGAAACTAAAGGAGAAAAATAAAACCTTACGAGAGACAATAAACAAAGCTTGTTGCCCCACCTGCGGCGTGGCCACCACAAGCAGAGATGGAGCCATGCCAACCGAAGAACAACAACTACGTATTGAAAATGCCAAACTCAAAGCCGAGGTAGAGAAGCTTCGAGCAGCTTTAGGGAAATACGCACCTGGGTCAACGTCCCCTTCGTGTTCTTCTGGCCATGACCAAGAGAATAGAAGCTCTTTGGATTTTTACACTGGAATTTTCGGAATCGACAATTCAAGGATAATGGATATAGTCAACCAAGCATTGGAGGAACTGATTAAGATGGCTACCATGGGAGAACCATTATGGCTACGTAGCTTCGAGACTGGTCGCGAAATACTTAACTACGACGAATATGTGAAGGAGTTTGCAGTTGAAAATTCAAGCAGTGGAAAGCCAAAGAGATCCATTGAAGCCTCAAGAGACACTGGAGTTGTTTTTGTGGATCTCCCTCGGCTTGTCCAAAGTTTTCTAGATGTGAATCAATGGAAAGAAATGTTTCCATGTTTGATATCTAAGGCAGCAACAGTTGATGTTATATGCAACGGAGAAGGTCCTAACAGGAATGGTGCAGTGCAACTGATGTTTGCTGAGATGCAAATGCTCACTCCAATGGTGCCCACAAGAGAAGTCTATTTTGTCCGTTTCTGCAAACAGTTGAGTGCTGAGCAGTGGGCAATCGTCGATGTATCCATAGACAAAGTAGAAGACAACATTGACGCATCCCTCGTGAAATGCAGAAAACGCCCTTCCGGTTGCATTATTGAGGACAAGTCCAATGGCCACTGCAAAGTAATATGGGTGGAGCACTTGGAATGCCAGAAGAGTGCAGTTCACTCCTTGTATCGTACCATTGTGAACAGTGGCCTAGCCTTTGGAGCAAGGCATTGGATTACGACTCTACAACTTCAATGTGAGCGTCTAGTTTTTTTCATGGCAACTAATGTTCCCATGAAGGATTCAACCGGTGTTGCCACATTGGCTGGGAGAAAAAGCATTTTGAAGTTGGCACAAAGAATGACATGGAGTTTCTGTCATGCAATTGGCGCATCAAGCTTCCACACATGGACTAAGGTTACAAGCAAAAACGGGGAAGACATAAGGATAAGTTCTAGAAAGAATTTGAACGATCCTGGTGAACCTCTTGGGTTGATACTGTGCGCTGTTTGTTCTGTGTGGTTGCCAGTCTCACAAAATGTTCTGTTTGATTTCTTGAGAGATGAAACACGCCGAAGTGAGTGGGATATCATGTCAAGTGGTGGGACAGTGCAGTCCATTGCAAATTTATCCAAAGGACAAGACCGAGGCAATGTAGTTACCATTCAAACAATTAAATTGAAAGAAAACAGTGTGTGGATACTACAAGATAGCTGCACAAATCCTTATGAGTCAATGGTGGTATATGCTTCTGTGGACATTAGTGGTATTCAGTCTGTAATGACAGGATGTGATTCAAGCAACCTTGCCATACTGCCTTCGGGATTCTCTATAATTCCTGATGGCCTGGAGTCAAGACCATTGGTGATTACTTCAAGGCAGGAAGAGAAATATACCGAAGGAGGATCTTTGTTTACAATGGCATTCCAGATCCTGACTAATGCATCTCCCACAGCCAAGTTAACAGTGGAGTCTGTGGACTCTGTCAACACTCTTGTATCTTGTACATTGAGAAATATCAGAACATGCTTACAATGTGAAGAGGGCTAG 2277 0.4484 MGADMSNNPPPTSHAKDFFASPALSLSLAGIFRHAGVAAEAEAATSNMEVEEWEEGSGGGERLEEISSENSGPTRSRSEDDFEGEGEHEDADADADGDRKKKKKRKKYHRHTADQIREMEALFKESPHPDEKQRQQLSKQLGLAPRQVKFWFQNRRTQIKAIQERHENSLLKSEIEKLKEKNKTLRETINKACCPTCGVATTSRDGAMPTEEQQLRIENAKLKAEVEKLRAALGKYAPGSTSPSCSSGHDQENRSSLDFYTGIFGIDNSRIMDIVNQALEELIKMATMGEPLWLRSFETGREILNYDEYVKEFAVENSSSGKPKRSIEASRDTGVVFVDLPRLVQSFLDVNQWKEMFPCLISKAATVDVICNGEGPNRNGAVQLMFAEMQMLTPMVPTREVYFVRFCKQLSAEQWAIVDVSIDKVEDNIDASLVKCRKRPSGCIIEDKSNGHCKVIWVEHLECQKSAVHSLYRTIVNSGLAFGARHWITTLQLQCERLVFFMATNVPMKDSTGVATLAGRKSILKLAQRMTWSFCHAIGASSFHTWTKVTSKNGEDIRISSRKNLNDPGEPLGLILCAVCSVWLPVSQNVLFDFLRDETRRSEWDIMSSGGTVQSIANLSKGQDRGNVVTIQTIKLKENSVWILQDSCTNPYESMVVYASVDISGIQSVMTGCDSSNLAILPSGFSIIPDGLESRPLVITSRQEEKYTEGGSLFTMAFQILTNASPTAKLTVESVDSVNTLVSCTLRNIRTCLQCEEG* 759
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2451 758 SMART START_1 273 497 IPR002913 GO:0008289
Vra5g2451 758 SMART HOX_1 104 166 IPR001356 GO:0003677
Vra5g2451 758 Pfam Homeodomain 105 160 IPR001356 GO:0003677
Vra5g2451 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 18 755 IPR042160 -
Vra5g2451 758 Gene3D - 92 175 - -
Vra5g2451 758 CDD START_ArGLABRA2_like 269 496 - -
Vra5g2451 758 ProSiteProfiles 'Homeobox' domain profile. 102 162 IPR001356 GO:0003677
Vra5g2451 758 Gene3D - 309 493 IPR023393 -
Vra5g2451 758 SUPERFAMILY Bet v1-like 267 497 - -
Vra5g2451 758 Pfam START domain 276 497 IPR002913 GO:0008289
Vra5g2451 758 ProSitePatterns 'Homeobox' domain signature. 137 160 IPR017970 GO:0000981|GO:0006355
Vra5g2451 758 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN GLABRA 2 18 755 - -
Vra5g2451 758 SUPERFAMILY Homeodomain-like 97 163 IPR009057 -
Vra5g2451 758 Coils Coil 212 232 - -
Vra5g2451 758 CDD homeodomain 109 160 IPR001356 GO:0003677
Vra5g2451 758 SUPERFAMILY Bet v1-like 519 719 - -
Vra5g2451 758 Coils Coil 161 191 - -
Vra5g2451 758 MobiDBLite consensus disorder prediction 39 115 - -
Vra5g2451 758 ProSiteProfiles START domain profile. 264 500 IPR002913 GO:0008289
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2451 Vra-Chr5 31538269 31544098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2451 66 757 Homeobox Transcription Factor Family AT1G79840 66.382 0.0 929
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Vra5g2451 START 7.2e-56 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2451 K09338 - gmx:100809926 1330.08