Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2440 ATGGAGTTTTGGCCGGAGTTTCTTGCGAGCAGCACCGGAAAAGAGTTTGTAGCAGGAGGGTTTGGAGGCACTGCCGGAATAATCTCCGGTTACCCTTTAGACACTCTCCGTGTGATGCAGCAGAACTCCTTCAACACCGCCTCCGCCTTCAGCATCCTCAGAAATGTGGTGGCCAATGAAGGACCAACAGCTCTCTACCGCGGCATGGCGGCACCTTTGGCCTCTGTTACCTTTCAGAATGCTATGGTTTTCCAAATTTACGCAATTCTTTCGAGGGCATTTAGTTCGTCCGATTTGGTTAATGATCCTCCTTCTTACAAGGGTGTTGCTTTAGGAGGATTTTGTAGCGGTGCCATACAGAGTATGATACTATCCCCTGTTGAGTTAGTTAAAATTCGGCTTCAGTTGCAGAACACAAGTCAATCCATAGAAACCCGAAAAGGTCCTATGAAGGTGGCAAAAAACATATGGAGAATAGAGGGTCTTCGTGGCATGTATCGGGGACTTGGGATCACCATGCTAAGAGATGCACCGGCACATGGTCTCTACTTTTGGACATATGAATATGCAAGGGAGAAGCTTCACCCAGGTTGTAGACGAAGTTGTGAAGAGAGCCTGAATACTATGCTGGTATCAGGAGGATTAGCTGGGGTGGTGAGTTGGGTTTTGAGCTACCCTTTAGATGTTATAAAAACAAGATTGCAGGCTCAAACACTTTCTTCGCAGAAATACAGAGGCATTTTGGATTGCCTTAGGAAGAGTGTTAGAGAAGAAGGATATGAGGTGCTATGGAGGGGTTTAGGAACTGCAGTTGCTAGAGCTTTTGTGGTGAACGGTGCTATATTTTCTGCATATGAGATCACTCTCAGGTGCCTTTTTGATAAATAA 888 0.4595 MEFWPEFLASSTGKEFVAGGFGGTAGIISGYPLDTLRVMQQNSFNTASAFSILRNVVANEGPTALYRGMAAPLASVTFQNAMVFQIYAILSRAFSSSDLVNDPPSYKGVALGGFCSGAIQSMILSPVELVKIRLQLQNTSQSIETRKGPMKVAKNIWRIEGLRGMYRGLGITMLRDAPAHGLYFWTYEYAREKLHPGCRRSCEESLNTMLVSGGLAGVVSWVLSYPLDVIKTRLQAQTLSSQKYRGILDCLRKSVREEGYEVLWRGLGTAVARAFVVNGAIFSAYEITLRCLFDK* 296
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2440 295 PANTHER MITOCHONDRIAL BASIC AMINO ACIDS TRANSPORTER-RELATED 1 294 - -
Vra5g2440 295 Gene3D Mitochondrial carrier domain 9 295 IPR023395 -
Vra5g2440 295 PRINTS Mitochondrial carrier protein signature 15 28 IPR002067 GO:0055085
Vra5g2440 295 PRINTS Mitochondrial carrier protein signature 28 42 IPR002067 GO:0055085
Vra5g2440 295 PRINTS Mitochondrial carrier protein signature 119 137 IPR002067 GO:0055085
Vra5g2440 295 PRINTS Mitochondrial carrier protein signature 166 184 IPR002067 GO:0055085
Vra5g2440 295 PRINTS Mitochondrial carrier protein signature 213 235 IPR002067 GO:0055085
Vra5g2440 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 10 93 IPR018108 -
Vra5g2440 295 SUPERFAMILY Mitochondrial carrier 12 286 IPR023395 -
Vra5g2440 295 Pfam Mitochondrial carrier protein 209 294 IPR018108 -
Vra5g2440 295 Pfam Mitochondrial carrier protein 11 96 IPR018108 -
Vra5g2440 295 Pfam Mitochondrial carrier protein 110 194 IPR018108 -
Vra5g2440 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 104 193 IPR018108 -
Vra5g2440 295 PANTHER CARNITINE/ACYLCARNITINE CARRIER-LIKE PROTEIN 1 294 - -
Vra5g2440 295 ProSiteProfiles Solute carrier (Solcar) repeat profile. 204 291 IPR018108 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2440 Vra-Chr5 31474559 31476921 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vra5g2440 1 295 Antiporters AT1G79900 70.169 6.56e-144 405
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2440 K15109 - gmx:100812034 531.946
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2440 5 31474559 31476921 Vra5g2440 5 31474559 31476921 ECH