Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vra5g2434 ATGAAGTATGATTCTGATTTTCATCAACTAGCTATAGCGACAAGAACCATGCCAAAGAAAATTCGAGATTACCTCTTCAAAATCAAAAGCCCTCGCCCTCAAATCCGATTACCCTCTAAGAACTGGATTCTGTCTGGTTGCAAACATCCTAGGACACCTTCCTTTGCCTTGTACAATGCTACAAACGAACCTTCTCCTCGTCGTCATCATCATCACCATCAAGAACACGTTGTTCGTAATAACAACAACAATCACCACCGCAAGGACGATGCAGCCACCTTAGCAGACGTTGACCGTTTCCTCTTAGAGAATTTCAAGTCTTTGTACCTCAAAGACGACGATGAAACCTTAGACACCAAAAGGGTCTTCGAAGGTGACGACCAAAACCACGTAGAAACAACATCGCCACGAGATGTTCGTGGGCCCACCCGGTTCTTCGTGAAGCCTGGGTTCTCTGGGTCACTAGTGGAGGACGCTCTCACAAACACCACCATTAATACAGCAACCAGTGACGAAGTAGGATCGGTGTCAACTGTCTCAACCCTCTACGATGTTTCGTCTTCCAGTTCTTACGAGAAGGAGGGTGCGGATCACGCGCTTCCGGATGATAGCATCGCTCTCTTGACTCACTCCACCAGCCCTTACGACGATTTCAGACGTTCCATGCAAGAAATGGTGAACAACCATGAAGGGGTGGTTGATTGGGATTTCATGGAGGAGCTCTTGTTTTCTTACCTTAATCTCAACCACAAAAAATCGCGTAAGTTCATCCTTGGTGCTTTCGTCGATCTCATCACCGCCATGCGTCGGAGTAATTCCGAACCACCTTCCGACAAGCCACGTAGCGTTCGAACTGTTAGGAGTGTGACCAGAAACGTAACGTTAGGATTTGGGTCTTCTCTGTAA 906 0.4713 MKYDSDFHQLAIATRTMPKKIRDYLFKIKSPRPQIRLPSKNWILSGCKHPRTPSFALYNATNEPSPRRHHHHHQEHVVRNNNNNHHRKDDAATLADVDRFLLENFKSLYLKDDDETLDTKRVFEGDDQNHVETTSPRDVRGPTRFFVKPGFSGSLVEDALTNTTINTATSDEVGSVSTVSTLYDVSSSSSYEKEGADHALPDDSIALLTHSTSPYDDFRRSMQEMVNNHEGVVDWDFMEELLFSYLNLNHKKSRKFILGAFVDLITAMRRSNSEPPSDKPRSVRTVRSVTRNVTLGFGSSL* 302
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vra5g2434 301 Pfam Transcriptional repressor, ovate 211 268 IPR006458 -
Vra5g2434 301 PANTHER TRANSCRIPTION REPRESSOR OFP14 18 281 - -
Vra5g2434 301 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 18 281 IPR038933 GO:0045892
Vra5g2434 301 TIGRFAM A_thal_3678: uncharacterized plant-specific domain TIGR01568 205 268 IPR006458 -
Vra5g2434 301 ProSiteProfiles OVATE domain profile. 207 267 IPR006458 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vra5g2434 Vra-Chr5 31436530 31437821 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF OFP Vra5g2434 Ovate 4.1e-22 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vra5g2434 - - vra:106761610 560.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vra5g2434 5 31436530 31437821 Vra5g2434 5 31436530 31437821 ECH
Vra5g2434 5 31436530 31437821 Vra9g0137 9 912237 913210 PCT